Factsheet for TraesCS6D01G122600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G255800.1
TraesCS2D01G266900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79910.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT1G79910.1	TraesCS2D01G266900.1	AT2G39760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	96.36	96.36
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	95.1	95.37
HORVU6Hr1G025460.3	Barley	nucleus	92.45	89.81
Os02t0159200-01	Rice	nucleus	65.31	69.19
EES04550	Sorghum	nucleus	60.84	63.69
Zm00001d053852_P001	Maize	nucleus	58.74	61.31
GSMUA_Achr5P23530_001	Banana	nucleus	13.29	53.07
KRH06586	Soybean	cytosol	4.2	49.18
KRG89505	Soybean	mitochondrion	11.47	43.39
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	43.64	42.98
GSMUA_Achr6P29590_001	Banana	cytosol	25.87	40.39
PGSC0003DMT400042551	Potato	nucleus	15.38	35.6
GSMUA_Achr8P15690_001	Banana	mitochondrion	33.15	35.37
CDX87282	Canola	cytosol	9.93	35.15
Solyc06g066690.2.1	Tomato	nucleus	14.96	34.63
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	32.59	34.62
VIT_09s0002g04580.t01	Wine grape	nucleus	23.64	33.73
CDX87899	Canola	nucleus	13.01	33.7
CDY52976	Canola	mitochondrion	14.41	33.33
CDY49898	Canola	mitochondrion	12.45	32.48
CDY49897	Canola	nucleus	11.89	31.72
KRH23458	Soybean	mitochondrion	17.48	31.33
CDX87900	Canola	mitochondrion	12.45	30.9
CDY37561	Canola	nucleus	16.08	30.5
Bra008502.1-P	Field mustard	nucleus	16.08	30.34
AT1G79910.1	Thale cress	nucleus	16.08	30.18
CDY41108	Canola	nucleus	15.94	30.16
AT1G52315.1	Thale cress	mitochondrion	14.41	29.68
Solyc03g120120.2.1	Tomato	nucleus	19.72	29.62
Bra018962.1-P	Field mustard	extracellular, vacuole	14.69	29.49
TraesCS4D01G219500.2	Wheat	mitochondrion	7.55	29.35
PGSC0003DMT400014529	Potato	nucleus	18.46	29.33
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	6.99	28.9
Solyc12g043150.1.1	Tomato	nucleus	20.42	28.63
KRH44367	Soybean	mitochondrion	12.87	28.57
KRH47048	Soybean	mitochondrion	15.24	28.53
CDX68838	Canola	nucleus	23.08	26.19
CDX75238	Canola	nucleus	23.08	26.15
VIT_11s0016g04010.t01	Wine grape	nucleus	25.59	25.21
PGSC0003DMT400092826	Potato	nucleus	14.83	24.94
KRH39280	Soybean	mitochondrion, nucleus	24.48	23.81
KRH48400	Soybean	mitochondrion, nucleus	24.34	23.67
AT4G32350.1	Thale cress	nucleus	23.08	22.54
PGSC0003DMT400022180	Potato	nucleus	17.34	22.46
Solyc07g022860.2.1	Tomato	nucleus	16.78	21.78
KRH60286	Soybean	nucleus	22.94	21.41
TraesCS4D01G219800.1	Wheat	mitochondrion	8.11	20.64
KRH41578	Soybean	nucleus	22.8	20.43
TraesCS3D01G263400.1	Wheat	mitochondrion, plastid	8.95	20.06
TraesCS5D01G353300.1	Wheat	mitochondrion	12.03	17.84
Bra030391.1-P	Field mustard	nucleus	12.17	17.4
TraesCS4D01G044800.1	Wheat	mitochondrion	8.11	16.76
TraesCS4D01G044400.1	Wheat	mitochondrion	7.69	15.62
TraesCS3D01G451700.1	Wheat	cytosol	10.77	15.04
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	9.93	13.15
TraesCS3D01G253500.1	Wheat	nucleus	13.43	8.59

Protein Annotations

EnsemblPlants:TraesCS6D01G122600.1	EnsemblPlantsGene:TraesCS6D01G122600	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF40	PFAM:PF03398	SEG:seg	MapMan:35.2

Description

No Description!

Coordinates

chr6D:+:87278217..87281814

Molecular Weight (calculated)

80593.5 Da

IEP (calculated)

9.765

GRAVY (calculated)

-1.144

Length

715 amino acids

Sequence
(BLAST)

001: MFDSLLNSKF HNKCKHAIKC TRTRLDLVRK KKQAMVKFLR KDVADLLTNN LESHAFGRME GLIVEMNQAS CYDMIEQYCD YIGKQLNNLQ KQSECPHEAL
101: EAVSTLIFAA ARYPDLPELC ELRHVFTEKY GASIEPFVSS EFVQKLQNKS FTKEEKLQVI EDVAEEFAIP FNTKTFERQI SGVPPNKKEL LKKGSFNGVE
201: VEASGRNGHR VDKHAVLDRK SKSIPDGREW KQEFQIKPKD IHVVPDYIGQ VGEKSRKNYS DKPVEKKHLD SDVPPVNMKR RNGHQKEVNK DEKKGGQSWR
301: ELMNAEELDL NGSKKQEVAV AKPVQREMKK IVPPYTDLKE TEKKDGAEKA NGKGYHRTHM AAGTDHNWGH ADLGLKTLGL EKQETESAGT LNGNGKTVNK
401: VPPYSKPYKA TSEKSAEEDN NGLYNRARHM GEFGQPVQDR QQMPEKLVNM RPPYVKPNSS TKPAHENPTD QAAANGYKLS GSEPTGHRRD GLVDDDGAPR
501: PVSVRRKSSR PPTHGSLYDE VTNDEKVTSQ TPGGRTRRPS SRNGSQDDHE RRKHSSRRNG STSGSDYQTE EDETDTAIDF GNLLPRAPRK HRSRSAHPRE
601: GGGHDDEERM MDKLLRHYSK KGMEREEEHK TRSKSRTPRP RPDQPADGNN REGAPSHPER TVSLPAESGS PVARPKAPAP ARSISLQQDT SRGNVHPKMP
701: DFDELAARIS ALKRA

Best Arabidopsis Sequence Match ( AT1G79910.1 )
(BLAST)

001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.