Factsheet for PGSC0003DMT400022180

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g022860.2.1	Tomato	nucleus	92.57	92.74
VIT_11s0016g04010.t01	Wine grape	nucleus	35.87	27.27
PGSC0003DMT400014529	Potato	nucleus	20.65	25.33
PGSC0003DMT400092826	Potato	nucleus	19.2	24.94
KRH48400	Soybean	mitochondrion, nucleus	32.97	24.76
KRH39280	Soybean	mitochondrion, nucleus	32.79	24.63
GSMUA_Achr5P23530_001	Banana	nucleus	7.61	23.46
CDX68838	Canola	nucleus	26.09	22.86
CDX75238	Canola	nucleus	26.09	22.82
PGSC0003DMT400042551	Potato	nucleus	12.68	22.65
KRH60286	Soybean	nucleus	30.62	22.06
AT4G32350.1	Thale cress	nucleus	28.8	21.72
GSMUA_Achr6P29590_001	Banana	cytosol	17.39	20.96
KRH41578	Soybean	nucleus	29.89	20.68
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	22.83	17.62
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	22.46	17.39
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	22.46	17.34
EES04550	Sorghum	nucleus	21.01	16.98
Zm00001d053852_P001	Maize	nucleus	21.01	16.93
Os06t0687000-00	Rice	mitochondrion	21.92	16.6
Os02t0159200-01	Rice	nucleus	20.29	16.59
HORVU6Hr1G025460.3	Barley	nucleus	21.38	16.03
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	19.38	15.9
Zm00001d014521_P001	Maize	mitochondrion	21.92	15.69
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	20.11	15.66
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	20.47	15.56
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	20.29	15.43
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	20.29	15.41
KXG20673	Sorghum	cytosol, nucleus, plastid	21.2	14.9
PGSC0003DMT400032356	Potato	cytosol, mitochondrion	7.07	14.83
GSMUA_Achr8P15690_001	Banana	mitochondrion	17.93	14.78
PGSC0003DMT400032944	Potato	mitochondrion	4.89	12.98
PGSC0003DMT400020212	Potato	cytosol	9.24	12.91
PGSC0003DMT400047266	Potato	nucleus	12.14	12.32
PGSC0003DMT400003908	Potato	plastid	10.14	11.45
PGSC0003DMT400033769	Potato	mitochondrion	8.15	10.54
PGSC0003DMT400070850	Potato	cytosol	9.42	9.85
Zm00001d036913_P001	Maize	cytosol	10.69	9.66
Zm00001d051744_P001	Maize	nucleus	8.51	9.36
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	10.14	5.16
KRH06586	Soybean	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400022180	EnsemblPlantsGene:PGSC0003DMG402008605	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF29	PFAM:PF03398	PGSC:PGSC0003DMG402008605	SEG:seg
UniParc:UPI000296FCDB	UniProt:M1AGB9	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402008605]

Coordinates

chr7:+:26751105..26753058

Molecular Weight (calculated)

62470.1 Da

IEP (calculated)

10.153

GRAVY (calculated)

-1.055

Length

552 amino acids

Sequence
(BLAST)

001: MFAAARFSDL PELRELRDLF QERYGNSLEC FVNQKFVEIL SSRPPAVEKR IQLLQDIAVE FSIRWDSMGF KKRMAFAQAH PSRSGLSHAS AGNHILPNGK
101: DGGLKADKLD IVLGERHKGL NDQHNIQNGR EGVVLKKEQQ DLHSSEGKES NKDRNKHHTK QEASYSMGRK HDILFDKEEE QTRIRNKAVL EKDDNSIRIA
201: KSGSSSHGER LEGFDNKFTR HNENHGQILT GRAQGTLSCA RSETVPSRGL PFRNEDVTSA WDTAIEKNTV NSTKMVQQDV GNRLMTSYAN FALPPPYSKS
301: KEKAIPPPYV KPNDSKERGL KGSKQSASEF DGHFRSSSPS NRVETIKITK ESDLSDHVAQ TNKPTRTNSH GHDKEFSHKD VILPKPRSVR RKHHKSATNN
401: HGEVDKSEDA RAAKRSSSSR RREHSRKGLQ ILFEAERHRK DEEERMIDKL LLHYSKRPSK CDVRKKPQAL ATPDTGEFSN NQTNGDQDKM ESDMVLFPKR
501: SISLPHEQAS PSKATPIFAR ANSFQPDNQA CHVHPKLPDY DDLSARFASL RG

Best Arabidopsis Sequence Match ( AT4G32350.2 )
(BLAST)

001: MQKTPECPED CREAISSLMF AASGFSELPE LRELRQMFHE KYTDSLALFV NQELVENMSS KPFSMEKKVK LMEDVALEFS IRWDSKDFEK RIVRQNSISV
101: METPKSTNDK YKPVDRNMAL PKREEFEGSE NGVSLNRKTA EASERRDPLF QSDKESYQNG LRGNQRGLTY KERSENVLHA SRSESKDNKA ERKEFYLHSK
201: QNPAREKHQP IFNEGDTIVM KVNYGNLGQG NGHRPGVVDA HKKTEFVASE RKEFYSQSKQ EPSRERHQPI FNDGDTIVMK VKHENHVQGN GHKNGVVDLH
301: KKIEVNASEK LKSSSSKRAD KLVIGFKQES FFQGYKHEKN EEHAHQKVED STSRPPKPNS KSKRAESINP GSRHHNDRES KENAVLVGKS TEEDPSGDNV
401: KGGEYEYDHA NPARKVEERE TERMKSPFYK SLPPPYVKKS IAKARHEKAE ALDNPKARFD GEEGNHPDNG KNVYGAERRN GAGHHEVNDI DNASLKRQTN
501: RRKHIVESGG DDHISSRRRE NSRKGLQVLI DEDEKDSEEK MMDKLLMHYS KKPSSYEKDN VQEESKSRRT HLKKGESDEE MMIHQPARSR SLPAEQLAGP
601: SEPAKTFARA ASFQPERSSE AKHVHPKLPN YDDLAARFAE LKGR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.