Factsheet for PGSC0003DMT400070850

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072560.2.1	Tomato	nucleus, unclear	96.97	96.97
VIT_18s0164g00040.t01	Wine grape	nucleus	61.17	59.93
KRH08570	Soybean	nucleus	59.28	59.28
KRH70215	Soybean	nucleus	59.09	58.1
GSMUA_Achr5P23420_001	Banana	mitochondrion	47.54	51.22
TraesCS3B01G498800.1	Wheat	cytosol	47.73	49.32
Bra036745.1-P	Field mustard	nucleus	52.84	49.29
CDY46461	Canola	cytosol, mitochondrion, nucleus	52.84	49.29
KXG24567	Sorghum	cytosol, plastid	47.92	49.03
HORVU3Hr1G098720.3	Barley	cytosol	47.54	48.93
TraesCS3A01G459100.1	Wheat	cytosol, plastid	47.54	48.83
TraesCS3D01G451700.1	Wheat	cytosol	47.16	48.63
CDX91784	Canola	nucleus	53.03	48.28
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	48.11	46.52
GSMUA_Achr6P02830_001	Banana	cytosol	51.7	46.43
KRH35011	Soybean	mitochondrion	33.9	46.02
Os08t0175200-01	Rice	nucleus	48.3	45.45
Zm00001d024425_P003	Maize	cytosol	47.92	44.62
AT1G34220.1	Thale cress	nucleus	54.73	44.53
CDY48635	Canola	cytosol	26.52	41.79
PGSC0003DMT400003908	Potato	plastid	29.92	32.31
PGSC0003DMT400032944	Potato	mitochondrion	10.98	27.88
PGSC0003DMT400033769	Potato	mitochondrion	18.94	23.42
PGSC0003DMT400042551	Potato	nucleus	13.45	22.98
PGSC0003DMT400032356	Potato	cytosol, mitochondrion	9.47	19.01
PGSC0003DMT400014529	Potato	nucleus	14.96	17.56
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	32.95	16.04
PGSC0003DMT400020212	Potato	cytosol	11.36	15.19
PGSC0003DMT400092826	Potato	nucleus	10.61	13.18
PGSC0003DMT400047266	Potato	nucleus	11.17	10.85
PGSC0003DMT400022180	Potato	nucleus	9.85	9.42

Protein Annotations

EMBL:AB192881	EnsemblPlants:PGSC0003DMT400070850	EnsemblPlantsGene:PGSC0003DMG400027555	EntrezGene:102585287	Gene3D:1.20.1260.60	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF5
PFAM:PF03398	PGSC:PGSC0003DMG400027555	ProteinID:BAE46414	ProteinID:BAE46414.1	RefSeq:XP_006354036.1	RefSeq:XP_015167069.1
SEG:seg	UniParc:UPI0002961BF5	UniProt:M1CMU9	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027555]

Coordinates

chr4:+:62257068..62264771

Molecular Weight (calculated)

58602.1 Da

IEP (calculated)

4.894

GRAVY (calculated)

-0.582

Length

528 amino acids

Sequence
(BLAST)

001: MDSFFSKGFK AAKCKTMLKL TIPRIKLLRN RREFQLKQMR KEIAKLLETG QEATARIRVE HIIREEKMMA AQEIVELFCE LISVRLPIIE AQRECPLDLK
101: EAISSVCFAA PRCADLPELL QVQMMFAGKY GKEFIAAATE LMPECGVNRQ LIELLSIRAP APDVKMKLLK EIAEEHQLDW DPSASETELL KSHEDLLNGP
201: TQFVSGAKVP LPKERLDEVQ HSASDQVFDK QTESEADFDL DFPEVPKQPL RPSTGGVSAP EMLPFPASAL SDSDEEVAKS SEDGELKSHK QDVERDELLQ
301: EKVVSKDFGS ADSLSAPEEE KQFLPFMVPP PKSPPFSSTE RTTTQSTQPP STTKTKVETD VDLQDVLAAA QAAADSAERA AAAARSAASL AQVRISELTR
401: KRSEEVPVSP SENPFYAEKQ ESHILEKPHL DLQRQSSNSD GIPSPLHGSP LEHQVSNIPS YDDSTVGVES PISHIHHPGQ GLHQPQRLPS MDDETYYSYP
501: NLFNATNGSN PGSRSQSFKD NIRSSHDK

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.