Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G498800.1 | Wheat | cytosol | 98.44 | 98.63 |
| TraesCS3A01G459100.1 | Wheat | cytosol, plastid | 95.7 | 95.33 |
| HORVU3Hr1G098720.3 | Barley | cytosol | 94.14 | 93.96 |
| KXG24567 | Sorghum | cytosol, plastid | 78.52 | 77.91 |
| Os08t0175200-01 | Rice | nucleus | 77.73 | 70.94 |
| Zm00001d049479_P003 | Maize | cytosol, mitochondrion, plastid | 74.22 | 69.6 |
| Zm00001d024425_P003 | Maize | cytosol | 76.37 | 68.96 |
| GSMUA_Achr5P23420_001 | Banana | mitochondrion | 49.41 | 51.63 |
| VIT_18s0164g00040.t01 | Wine grape | nucleus | 50.59 | 48.05 |
| GSMUA_Achr6P02830_001 | Banana | cytosol | 54.88 | 47.79 |
| PGSC0003DMT400070850 | Potato | cytosol | 48.63 | 47.16 |
| Solyc04g072560.2.1 | Tomato | nucleus, unclear | 48.44 | 46.97 |
| TraesCS3D01G263400.1 | Wheat | mitochondrion, plastid | 28.91 | 46.4 |
| KRH08570 | Soybean | nucleus | 47.46 | 46.02 |
| KRH70215 | Soybean | nucleus | 47.66 | 45.44 |
| KRH35011 | Soybean | mitochondrion | 33.01 | 43.44 |
| CDY48635 | Canola | cytosol | 26.95 | 41.19 |
| Bra036745.1-P | Field mustard | nucleus | 44.73 | 40.46 |
| CDY46461 | Canola | cytosol, mitochondrion, nucleus | 44.73 | 40.46 |
| CDX91784 | Canola | nucleus | 45.12 | 39.83 |
| AT1G34220.1 | Thale cress | nucleus | 46.68 | 36.83 |
| TraesCS4D01G219500.2 | Wheat | mitochondrion | 12.11 | 33.7 |
| TraesCS5D01G353300.1 | Wheat | mitochondrion | 29.88 | 31.74 |
| TraesCS4D01G044800.1 | Wheat | mitochondrion | 17.58 | 26.01 |
| TraesCS4D01G044400.1 | Wheat | mitochondrion | 17.19 | 25.0 |
| TraesCS4D01G219800.1 | Wheat | mitochondrion | 12.7 | 23.13 |
| TraesCS4D01G219400.3 | Wheat | mitochondrion, plastid | 16.6 | 15.74 |
| TraesCS3D01G253500.1 | Wheat | nucleus | 32.23 | 14.77 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 15.04 | 10.77 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 14.06 | 9.92 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G451700.1 | EnsemblPlantsGene:TraesCS3D01G451700 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | ncoils:Coil | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF5 | PFAM:PF03398 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:559184386..559187288
Molecular Weight (calculated)
56341.3 Da
IEP (calculated)
4.691
GRAVY (calculated)
-0.518
Length
512 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMLEAFFGK GAGGGGGGGF RAAKCKTLLK LSIPRIKLLR NRRELQLRQM RRDIAKLLEA GQEATARIRV EHIIREENMM AAQEILELFC ELVAVRLPVI
101: EAQKECPIDL KEAISSICFA APRCSDLPEL MQVQMMFATK YGKEFVAAAA ELMPDSGVNR QIIELLSIRP PPVDIKMKLL KEIAEEHEID WDPSETETEY
201: LKPHEDLLNG PTYFSGSTLP LPKEKHEEPV AATAADEPGE DYQSDGGFDS LDLPEVPKAA IRPASGTQST PDIGPHVQSS QSAAHDFPNP PDLEENPTAD
301: AALYNYLKSS EPPVSPQFAQ PRMPALPDEK KQFVPFVSPP PFASASSMER SDSIPLNSPQ VKPTEQEFFT RSVDEVTAPQ TPKDFNMFSK RPEQVHSISP
401: IESGENIDMD GVVSAAQTAA DSAERAASAA RAAANLAKLC IADLKKNTRV YESHSDGSQK ESHHQTEQKP VFDHQDSFSN DFEGYAPSHV PQRSTSLEDD
501: PFSYPNLFSA KP
101: EAQKECPIDL KEAISSICFA APRCSDLPEL MQVQMMFATK YGKEFVAAAA ELMPDSGVNR QIIELLSIRP PPVDIKMKLL KEIAEEHEID WDPSETETEY
201: LKPHEDLLNG PTYFSGSTLP LPKEKHEEPV AATAADEPGE DYQSDGGFDS LDLPEVPKAA IRPASGTQST PDIGPHVQSS QSAAHDFPNP PDLEENPTAD
301: AALYNYLKSS EPPVSPQFAQ PRMPALPDEK KQFVPFVSPP PFASASSMER SDSIPLNSPQ VKPTEQEFFT RSVDEVTAPQ TPKDFNMFSK RPEQVHSISP
401: IESGENIDMD GVVSAAQTAA DSAERAASAA RAAANLAKLC IADLKKNTRV YESHSDGSQK ESHHQTEQKP VFDHQDSFSN DFEGYAPSHV PQRSTSLEDD
501: PFSYPNLFSA KP
001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.