Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G255800.1 | |
| TraesCS2D01G266900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | TraesCS2A01G255800.1 | AT2G39760.1 | 21798944 |
| AT1G79910.1 | TraesCS2D01G266900.1 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 90.36 | 92.52 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 91.6 | 91.47 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 90.63 | 90.63 |
| Os06t0687000-00 | Rice | mitochondrion | 58.54 | 58.3 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 13.09 | 53.07 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 55.23 | 51.08 |
| KRH06586 | Soybean | cytosol | 4.27 | 50.82 |
| Zm00001d014521_P001 | Maize | mitochondrion | 53.17 | 50.06 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 42.98 | 43.64 |
| KRG89505 | Soybean | mitochondrion | 10.74 | 41.27 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 23.83 | 37.77 |
| CDX87282 | Canola | cytosol | 10.47 | 37.62 |
| Zm00001d051744_P001 | Maize | nucleus | 25.76 | 37.25 |
| Zm00001d036913_P001 | Maize | cytosol | 29.48 | 35.02 |
| Solyc06g066690.2.1 | Tomato | nucleus | 14.19 | 33.33 |
| PGSC0003DMT400042551 | Potato | nucleus | 14.19 | 33.33 |
| CDY52976 | Canola | mitochondrion | 13.77 | 32.36 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 22.31 | 32.34 |
| KRH44367 | Soybean | mitochondrion | 14.33 | 32.3 |
| KRH47048 | Soybean | mitochondrion | 16.8 | 31.94 |
| CDY37561 | Canola | nucleus | 16.53 | 31.83 |
| Bra008502.1-P | Field mustard | nucleus | 16.53 | 31.66 |
| CDX87899 | Canola | nucleus | 11.98 | 31.52 |
| CDY41108 | Canola | nucleus | 16.25 | 31.22 |
| CDY49898 | Canola | mitochondrion | 11.71 | 31.02 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 28.51 | 30.76 |
| AT1G79910.1 | Thale cress | nucleus | 15.98 | 30.45 |
| KRH23458 | Soybean | mitochondrion | 16.53 | 30.08 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 7.16 | 30.06 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 27.41 | 29.7 |
| CDX87900 | Canola | mitochondrion | 11.71 | 29.51 |
| CDY49897 | Canola | nucleus | 10.88 | 29.48 |
| Bra018962.1-P | Field mustard | extracellular, vacuole | 13.91 | 28.37 |
| PGSC0003DMT400014529 | Potato | nucleus | 17.36 | 28.0 |
| AT1G52315.1 | Thale cress | mitochondrion | 13.36 | 27.95 |
| Solyc03g120120.2.1 | Tomato | nucleus | 18.32 | 27.94 |
| Solyc12g043150.1.1 | Tomato | nucleus | 19.01 | 27.06 |
| TraesCS4D01G219500.2 | Wheat | mitochondrion | 6.61 | 26.09 |
| VIT_11s0016g04010.t01 | Wine grape | nucleus | 24.66 | 24.66 |
| PGSC0003DMT400092826 | Potato | nucleus | 14.05 | 24.0 |
| CDX68838 | Canola | nucleus | 20.8 | 23.97 |
| CDX75238 | Canola | nucleus | 20.66 | 23.77 |
| KRH39280 | Soybean | mitochondrion, nucleus | 23.83 | 23.54 |
| KRH48400 | Soybean | mitochondrion, nucleus | 23.69 | 23.4 |
| KRH60286 | Soybean | nucleus | 22.86 | 21.67 |
| KRH41578 | Soybean | nucleus | 22.73 | 20.68 |
| PGSC0003DMT400022180 | Potato | nucleus | 15.56 | 20.47 |
| TraesCS3D01G263400.1 | Wheat | mitochondrion, plastid | 8.95 | 20.38 |
| AT4G32350.1 | Thale cress | nucleus | 20.52 | 20.36 |
| Solyc07g022860.2.1 | Tomato | nucleus | 15.43 | 20.33 |
| TraesCS4D01G219800.1 | Wheat | mitochondrion | 7.16 | 18.51 |
| Bra030391.1-P | Field mustard | nucleus | 11.43 | 16.6 |
| TraesCS4D01G044400.1 | Wheat | mitochondrion | 7.71 | 15.91 |
| TraesCS4D01G044800.1 | Wheat | mitochondrion | 7.44 | 15.61 |
| TraesCS5D01G353300.1 | Wheat | mitochondrion | 10.19 | 15.35 |
| TraesCS3D01G451700.1 | Wheat | cytosol | 9.92 | 14.06 |
| TraesCS4D01G219400.3 | Wheat | mitochondrion, plastid | 9.92 | 13.33 |
| TraesCS3D01G253500.1 | Wheat | nucleus | 12.26 | 7.97 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G433700.1 | EnsemblPlantsGene:TraesCS7D01G433700 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | ncoils:Coil | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF40 | PFAM:PF03398 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:553814996..553818640
Molecular Weight (calculated)
81492.1 Da
IEP (calculated)
8.662
GRAVY (calculated)
-1.007
Length
726 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDGLINSKF YNRCKHAFKC IRTRLVVIRR KKQAMIGFLK KDVADLLANG LDIHAFGRMD ALIMELNHAS CYDMVEQYCD FLGKQLNSLQ KQRDCPQEAM
101: EAVSTLIFAT ARFPDLPELC DLRHIFTERY GGSLEPFVSL EFIRKLESEL FTNEEKFQVM QSIAEESSVG FDMRALEIKL WAARESEDDL LEKDSMKKDE
201: PAVPLPIKQK EDGRLNDNTG RKNSDKSYGK EQLEKSVSPL DLKRENTQKD DNTRRRHADK ADGKEHLEKS VSPLQTEREE AQKRVQKLKK KDVRPSEKEL
301: MEAVELDING LPKQGSGSVK FPETESNRIV PPIVKPKETK KERGVEKENN RGLGYHHRSP IPGRPDYTRI HANLGCKALG LQNQGPTSPN PSSGKTTNRP
401: PPTSNPNGAK GRNCDEKEEG NSCLRDRPQH LEDLGHTVQN GQRAPHRVAN VQPPYVKPKL GMQPVNDDPA KPIDRNCNMS ERTDRLADKG VLRPVSVRRR
501: PAAPSYDEAP NGEKATSQKA NCHRTQPSKH KGANEDYDRK GNGVGNGRNV ERTPSGRPSH PGMRNGVLYD DDYDGPMQRP KAGEDETDID FGNMLPRTAN
601: GHHRLNSRNI DAHGRDPDEE ERMMDKLLMH YSKKGSGTDE TQTATVETSR TANYHGAQTQ CQQNGSLNTT GRAVSLPHES ISPGEAAKVP ARSTSLRSDC
701: PGVVRVHPKM PDFEELAARV MALRNA
101: EAVSTLIFAT ARFPDLPELC DLRHIFTERY GGSLEPFVSL EFIRKLESEL FTNEEKFQVM QSIAEESSVG FDMRALEIKL WAARESEDDL LEKDSMKKDE
201: PAVPLPIKQK EDGRLNDNTG RKNSDKSYGK EQLEKSVSPL DLKRENTQKD DNTRRRHADK ADGKEHLEKS VSPLQTEREE AQKRVQKLKK KDVRPSEKEL
301: MEAVELDING LPKQGSGSVK FPETESNRIV PPIVKPKETK KERGVEKENN RGLGYHHRSP IPGRPDYTRI HANLGCKALG LQNQGPTSPN PSSGKTTNRP
401: PPTSNPNGAK GRNCDEKEEG NSCLRDRPQH LEDLGHTVQN GQRAPHRVAN VQPPYVKPKL GMQPVNDDPA KPIDRNCNMS ERTDRLADKG VLRPVSVRRR
501: PAAPSYDEAP NGEKATSQKA NCHRTQPSKH KGANEDYDRK GNGVGNGRNV ERTPSGRPSH PGMRNGVLYD DDYDGPMQRP KAGEDETDID FGNMLPRTAN
601: GHHRLNSRNI DAHGRDPDEE ERMMDKLLMH YSKKGSGTDE TQTATVETSR TANYHGAQTQ CQQNGSLNTT GRAVSLPHES ISPGEAAKVP ARSTSLRSDC
701: PGVVRVHPKM PDFEELAARV MALRNA
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.