CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018962.1-P	Field mustard	extracellular, vacuole	94.5	82.02
CDY49898	Canola	mitochondrion	65.7	74.09
CDX87900	Canola	mitochondrion	66.67	71.53
AT1G52315.1	Thale cress	mitochondrion	75.4	67.15
CDX87899	Canola	nucleus	49.84	55.8
CDY49897	Canola	nucleus	42.39	48.88
GSMUA_Achr5P23530_001	Banana	nucleus	23.62	40.78
CDX87282	Canola	cytosol	26.54	40.59
CDY37561	Canola	nucleus	32.69	26.79
CDY41108	Canola	nucleus	32.69	26.72
CDY04642	Canola	cytosol	11.65	24.0
CDX78503	Canola	mitochondrion	23.62	20.74
GSMUA_Achr6P29590_001	Banana	cytosol	29.13	19.65
CDX70491	Canola	mitochondrion	23.95	19.53
CDY20110	Canola	nucleus	14.89	19.25
CDY53122	Canola	mitochondrion	20.06	19.2
CDY58595	Canola	mitochondrion	20.06	19.2
CDY21843	Canola	nucleus	14.89	18.78
CDY22873	Canola	mitochondrion	21.68	18.72
CDY69937	Canola	plastid	24.27	18.07
CDX97673	Canola	plastid	14.89	17.83
CDX98558	Canola	plastid	14.89	17.83
CDY41639	Canola	plastid	24.6	17.67
CDY33850	Canola	mitochondrion	20.71	17.63
CDX93076	Canola	mitochondrion	13.59	17.36
CDX75521	Canola	plastid	23.3	16.63
CDX68838	Canola	nucleus	33.66	16.51
CDX69159	Canola	plastid	23.3	16.36
CDX75238	Canola	nucleus	33.33	16.32
CDY50176	Canola	mitochondrion	20.06	15.74
CDY19375	Canola	mitochondrion	20.06	15.2
CDY21093	Canola	mitochondrion	19.42	15.19
Zm00001d053852_P001	Maize	nucleus	33.33	15.04
EES04550	Sorghum	nucleus	32.69	14.79
Os02t0159200-01	Rice	nucleus	31.72	14.52
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	33.33	14.41
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	33.33	14.41
GSMUA_Achr8P15690_001	Banana	mitochondrion	31.07	14.33
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	33.01	14.31
CDY15051	Canola	cytosol	8.09	14.12
HORVU6Hr1G025460.3	Barley	nucleus	33.33	13.99
Os06t0687000-00	Rice	mitochondrion	33.01	13.99
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	32.04	13.96
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	32.36	13.77
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	32.04	13.62
KXG20673	Sorghum	cytosol, nucleus, plastid	34.3	13.5
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	29.13	13.37
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	31.07	13.22
Zm00001d014521_P001	Maize	mitochondrion	32.04	12.84
CDY46461	Canola	cytosol, mitochondrion, nucleus	23.3	12.72
CDX91784	Canola	nucleus	23.3	12.41
CDY48635	Canola	cytosol	11.65	10.75
CDY43502	Canola	mitochondrion	21.68	7.17
CDY35879	Canola	mitochondrion	21.04	7.09
CDX82713	Canola	mitochondrion	21.04	7.07
Zm00001d036913_P001	Maize	cytosol	10.36	5.24
Zm00001d051744_P001	Maize	nucleus	4.85	2.99

Protein Annotations

EnsemblPlants:CDY52976	EnsemblPlantsGene:GSBRNA2T00008254001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF14	PFAM:PF03398	ProteinID:CDY52976	ProteinID:CDY52976.1
SEG:seg	UniParc:UPI0004EDD574	UniProt:A0A078IT42	MapMan:35.2	:	:

Description

BnaA06g01610DBnaA06g01610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT42]

Coordinates

chrLK033147:-:56137..57554

Molecular Weight (calculated)

36021.4 Da

IEP (calculated)

9.565

GRAVY (calculated)

-0.644

Length

309 amino acids

Sequence
(BLAST)

001: MKIFLRCFKP KFYKKCKSAT SYMKIRLEIE RKRRIAMIKF LKMDIVEFLK NGLDYDAYRR AEVLLEELRI ISCYDILERF CDCISENLSL MLKKRECPEE
101: CREAVSSLIY AAAWIPDVPE LKDLRAVFTR RFGSFIVSSV NYELVEKTEL RRRPSRELKI QTVKDIAKEF SIDWDPTALN LLLLRQTSAL QIEDKVETGA
201: DDPNIERKKS IVNDQSENES ALSQAWTRDS LSNRSLKTKP GAGNDEKAQE EKLEKKKSID QENSKLLKPQ GSEKEASSTR KNERTSSFQR PKLLDYDDVV
301: ARLAALRRR

Best Arabidopsis Sequence Match ( AT1G52315.1 )
(BLAST)

001: MFLRCFKPKF YKKSKSTTSY MKIRIDIVRR KRIAMVRNYK TDIVNFLKNG QDSEAYRRAE LLLEELRIIS CYDLIERFCD CISENLSLML KKRECPEECR
101: EAVSSLIYAT AWVPDVPELK DLRAVFTKRF GNFIASSVNH ELVEKTELLR PPSRELKIQT VKDVANEFSI NWDPTPLKLM LLRETSALQI KDKVETRADY
201: LNKDTEKSFM DEHSDDESVL SESWRIDSLS KGSLSSSSSS SSSSLRRVSV RKKKGKKILP YGIISSPDTK LGAGNDEKAQ EEKEEKRKIA DQENSRLLGI
301: QGSRSLTSTS NNEVSTIREN ERMSSFQRPN LLDYDDVVAR LAALRRR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4ICV8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.