Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021112.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY21843 | Canola | nucleus | 95.4 | 93.06 |
| CDX97673 | Canola | plastid | 65.69 | 60.85 |
| CDX98558 | Canola | plastid | 65.27 | 60.47 |
| AT3G15490.1 | Thale cress | mitochondrion, nucleus | 45.19 | 51.18 |
| CDX93076 | Canola | mitochondrion | 49.79 | 49.17 |
| CDY15051 | Canola | cytosol | 28.45 | 38.42 |
| KRH26063 | Soybean | cytosol | 25.52 | 29.19 |
| KRH55350 | Soybean | extracellular | 24.27 | 28.43 |
| CDY04642 | Canola | cytosol | 15.48 | 24.67 |
| CDX87282 | Canola | cytosol | 18.41 | 21.78 |
| CDX87899 | Canola | nucleus | 20.5 | 17.75 |
| CDY49897 | Canola | nucleus | 19.67 | 17.54 |
| CDY49898 | Canola | mitochondrion | 19.25 | 16.79 |
| CDY22873 | Canola | mitochondrion | 25.1 | 16.76 |
| CDY33850 | Canola | mitochondrion | 25.1 | 16.53 |
| CDX78503 | Canola | mitochondrion | 23.43 | 15.91 |
| CDX87900 | Canola | mitochondrion | 18.41 | 15.28 |
| CDY52976 | Canola | mitochondrion | 19.25 | 14.89 |
| CDX70491 | Canola | mitochondrion | 23.43 | 14.78 |
| CDY58595 | Canola | mitochondrion | 19.25 | 14.24 |
| CDY53122 | Canola | mitochondrion | 19.25 | 14.24 |
| CDY37561 | Canola | nucleus | 20.08 | 12.73 |
| CDY41108 | Canola | nucleus | 20.08 | 12.7 |
| CDY50176 | Canola | mitochondrion | 20.5 | 12.44 |
| CDY69937 | Canola | plastid | 20.92 | 12.05 |
| CDX75521 | Canola | plastid | 21.76 | 12.01 |
| CDY21093 | Canola | mitochondrion | 19.67 | 11.9 |
| CDX69159 | Canola | plastid | 21.76 | 11.82 |
| CDY19375 | Canola | mitochondrion | 20.08 | 11.76 |
| CDY41639 | Canola | plastid | 20.5 | 11.4 |
| CDY48635 | Canola | cytosol | 15.06 | 10.75 |
| CDY46461 | Canola | cytosol, mitochondrion, nucleus | 23.01 | 9.72 |
| CDX91784 | Canola | nucleus | 23.01 | 9.48 |
| CDX75238 | Canola | nucleus | 17.99 | 6.81 |
| CDX68838 | Canola | nucleus | 16.74 | 6.35 |
| CDY43502 | Canola | mitochondrion | 23.01 | 5.88 |
| CDY35879 | Canola | mitochondrion | 21.76 | 5.67 |
| CDX82713 | Canola | mitochondrion | 21.76 | 5.66 |
Protein Annotations
| EnsemblPlants:CDY20110 | EnsemblPlantsGene:GSBRNA2T00009966001 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | PANTHER:PTHR12161 | PFAM:PF03398 | ProteinID:CDY20110 | ProteinID:CDY20110.1 | UniParc:UPI0002543F8E |
| UniProt:A0A078G0N4 | MapMan:35.2 | : | : | : | : |
Description
BnaA01g28920DBnaA01g28920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0N4]
Coordinates
chrLK032103:-:223761..224818
Molecular Weight (calculated)
27565.9 Da
IEP (calculated)
9.642
GRAVY (calculated)
-0.649
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MKETACAKNK EPKPGCFRNV FAVWFRSSRC RQASKCKLHI QSLQCSVKIH RRRRDCMVKQ SRSDVAKLLD SDRLQEARRK TRQIYEDEKM LSAYDQVDYF
101: CTSILQNFSP LDRQSDVHLL PEETKEAMAG LIFAASRIGE LKELQIIRSL FVQRFGLGFD KDCVDLRPGH LVSSEIVKIL ETKYSKDAFT PENLFGIFQN
201: YQTNSTTTNV DSITEDSASR NDHGIARSDT AKKRNQRKL
101: CTSILQNFSP LDRQSDVHLL PEETKEAMAG LIFAASRIGE LKELQIIRSL FVQRFGLGFD KDCVDLRPGH LVSSEIVKIL ETKYSKDAFT PENLFGIFQN
201: YQTNSTTTNV DSITEDSASR NDHGIARSDT AKKRNQRKL
001: MVRQSRSDIA QLLSYGRYSE ALPKAKQFYE DERRLSAYDQ VELFCTTILQ NISSLKYENN VDLLPEETKK AMAGIIFAAS RIGELEDLQH IRSFFVQRFG
101: LKFDKECVDL RQGNVVGFEI VKILNTNMRG DEITHIVREL SHKYKTNITT STDSISEDLA SSDDLGIADS DAMKVEKMKR ALRRKKVMKE NSKFLHPNLR
201: ESQGRDRSFR R
101: LKFDKECVDL RQGNVVGFEI VKILNTNMRG DEITHIVREL SHKYKTNITT STDSISEDLA SSDDLGIADS DAMKVEKMKR ALRRKKVMKE NSKFLHPNLR
201: ESQGRDRSFR R
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q4PSP2]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.