CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33850	Canola	mitochondrion	96.93	95.59
CDX78503	Canola	mitochondrion	44.69	45.45
CDX70491	Canola	mitochondrion	46.37	43.8
VIT_12s0059g01700.t01	Wine grape	golgi	26.82	41.2
AT1G51900.1	Thale cress	mitochondrion	62.29	28.81
CDX87282	Canola	cytosol	16.2	28.71
CDX98558	Canola	plastid	19.27	26.74
CDX97673	Canola	plastid	19.27	26.74
Solyc12g010700.1.1	Tomato	cytosol	33.52	26.49
CDY04642	Canola	cytosol	10.61	25.33
CDY20110	Canola	nucleus	16.76	25.1
PGSC0003DMT400020212	Potato	cytosol	26.26	23.8
CDY21843	Canola	nucleus	16.2	23.67
KRH70127	Soybean	mitochondrion, nucleus	24.86	23.42
CDX93076	Canola	mitochondrion	15.08	22.31
CDX87899	Canola	nucleus	17.04	22.1
CDY52976	Canola	mitochondrion	18.72	21.68
CDY49897	Canola	nucleus	15.92	21.27
KRH26928	Soybean	nucleus	39.39	21.27
KRH22410	Soybean	mitochondrion, nucleus	38.55	20.72
CDY49898	Canola	mitochondrion	15.36	20.07
CDY37561	Canola	nucleus	20.95	19.89
CDY41108	Canola	nucleus	20.67	19.58
CDY69937	Canola	plastid	22.63	19.52
PGSC0003DMT400047266	Potato	nucleus	28.49	18.75
CDY15051	Canola	cytosol	9.22	18.64
CDY41639	Canola	plastid	22.07	18.37
CDX87900	Canola	mitochondrion	14.53	18.06
CDX75521	Canola	plastid	21.79	18.01
CDY58595	Canola	mitochondrion	16.2	17.96
CDY53122	Canola	mitochondrion	16.2	17.96
CDX69159	Canola	plastid	21.23	17.27
CDY19375	Canola	mitochondrion	18.44	16.18
CDY50176	Canola	mitochondrion	17.6	15.99
CDY21093	Canola	mitochondrion	17.32	15.7
CDX75238	Canola	nucleus	22.63	12.84
CDY48635	Canola	cytosol	12.01	12.84
CDX68838	Canola	nucleus	22.07	12.54
CDY46461	Canola	cytosol, mitochondrion, nucleus	19.27	12.19
Solyc07g054230.2.1	Tomato	nucleus	15.08	12.03
CDX91784	Canola	nucleus	19.27	11.9
CDY35879	Canola	mitochondrion	20.67	8.07
CDY43502	Canola	mitochondrion	20.95	8.02
CDX82713	Canola	mitochondrion	20.39	7.94

Protein Annotations

EnsemblPlants:CDY22873	EnsemblPlantsGene:GSBRNA2T00021231001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF18	PFAM:PF03398	ProteinID:CDY22873
ProteinID:CDY22873.1	SEG:seg	UniParc:UPI0004EDBF78	UniProt:A0A078GE03	MapMan:35.2	:

Description

BnaA06g02040DBnaA06g02040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE03]

Coordinates

chrLK032136:-:596601..597905

Molecular Weight (calculated)

42200.4 Da

IEP (calculated)

7.122

GRAVY (calculated)

-0.636

Length

358 amino acids

Sequence
(BLAST)

001: MFGFLFHRWR KASKCKKLLQ QLQSRLKLLK NKNYAISRHL RDDIALFIRI NDHTRALLRT KQLLLVQNSI SIYDLLLQFS DFILLHFSSI RKHRALVNDD
101: LNEAVSSLVF ASARCGELPE LVGIRELFLQ RYGQNYVTKA LQLLPGHLVN IQIKEKLSAT TVPEDLKSAL LDEIAKEYGL RLEMLMLEYT PEVEKQVNEE
201: EEKKVVDSDF NSFSDDQSPE VYKFSLTDVE EEKSKEERSM EDDDIEETEV GKDDHRVFRF KESSEEEISS LSSSGGFKDM ESLRYYKRRE KIRTRRRSSS
301: SPTTCYHIVY NVFWVKNEEE EEEVRRRLLP KHVHPKLPDY DQIAAQFKAL RTQQRMHS

Best Arabidopsis Sequence Match ( AT2G14830.1 )
(BLAST)

001: MFCFLFGWRR TSKCKSVVKQ LQCRLNLLKN KKYAISSHLR NDIAQLLRIG ERDRALHRAQ QLFLDENLMS LYHLLLHFSD IILLNLSYIR RRRDLPDGIN
101: EAVSTLVFAS ARCGDLPELR ALRVLFGKRY GNHFVDTALN LLPGNCVNPQ VIEKLSIISV SDDAKSKLLG EIVEEYNLRL EVLAIEYTPE FHKQVLKSEK
201: AEEEKEVMSS NSAQPYCSSQ KAESEAEVYK FTLTDADIEE NQEQERKVCD EEDDCIEEEV VEEDQSVFRF RESTEDERKE RKRLRRKPRS TSSSSSPIAK
301: DVDCWRYYYK GKRSRQRKEC GKCCYHIVYN VFTMLPDQKE SEEGERSFKK AMHVHPKLPD YDQIVAHFTA LRKQQQQKQK HMRS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:TAIR;Acc:AT2G14830]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.