Factsheet for PGSC0003DMT400047266

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054230.2.1	Tomato	nucleus	71.51	86.64
PGSC0003DMT400020212	Potato	cytosol	34.93	48.1
VIT_12s0059g01700.t01	Wine grape	golgi	15.62	36.48
CDY22873	Canola	mitochondrion	18.75	28.49
CDX78503	Canola	mitochondrion	18.01	27.84
CDY33850	Canola	mitochondrion	18.57	27.82
Bra006177.1-P	Field mustard	mitochondrion	17.83	27.56
AT2G14830.1	Thale cress	mitochondrion	19.3	27.34
CDX70491	Canola	mitochondrion	18.75	26.91
KRH22410	Soybean	mitochondrion, nucleus	31.99	26.13
KRH26928	Soybean	nucleus	31.07	25.49
PGSC0003DMT400032356	Potato	cytosol, mitochondrion	11.95	24.71
KRH70127	Soybean	mitochondrion, nucleus	16.91	24.21
PGSC0003DMT400042551	Potato	nucleus	12.13	21.36
PGSC0003DMT400032944	Potato	mitochondrion	6.62	17.31
PGSC0003DMT400014529	Potato	nucleus	14.15	17.11
PGSC0003DMT400003908	Potato	plastid	12.5	13.91
PGSC0003DMT400092826	Potato	nucleus	10.66	13.65
AT1G51900.1	Thale cress	mitochondrion	18.93	13.31
PGSC0003DMT400022180	Potato	nucleus	12.32	12.14
PGSC0003DMT400033769	Potato	mitochondrion	9.38	11.94
PGSC0003DMT400070850	Potato	cytosol	10.85	11.17
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	14.15	7.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400047266	EnsemblPlantsGene:PGSC0003DMG400018353	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF28	PFAM:PF03398	PGSC:PGSC0003DMG400018353	UniParc:UPI0002954719
UniProt:M1BKF1	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018353]

Coordinates

chr7:+:48929219..48931979

Molecular Weight (calculated)

62997.9 Da

IEP (calculated)

7.429

GRAVY (calculated)

-0.933

Length

544 amino acids

Sequence
(BLAST)

001: MVEQLSLDER KVAMYDLLEN YCEFIMINLP CIRKHKECPD DINEAVSSLI FASARLGDLP ELAAIRKFFS ERYGQRFEKS ALQLLPGNVV SYQIIDYICT
101: SSVSEEEKYR LVDEIARSCY QQGPLLLEYR RDELVNETSN AAADYMDPEI NDPSDSHQQL LPTANSTRFS TTKSRKDSVN CLKDNHNERV LDSERVTGRE
201: KRNINAFISE QNVERRAAES STEEDSAVLP EQMIYLDDIQ EFESAVKKDV NFEDQRLFMF KAPFVPSRLK IDARRKFEGI EKKFESPNAK ERSKTSRKNR
301: TISGKRTRGK SGSIVSDIDS TIYYGDLPES SPDSKPKRQN RRRSTRKSQK SYHTFAHDTK DQPCYVKFRS TMTFVKCIDD HSSCNGTMEN HCSLEHPCYY
401: WITDKKGNRE SPLRVPRRRV KSTKDCNNQD QNVESMNEHY VKHDTEEISK SQETCDSTMS STSRMTYQRG RDENQAPYLR AMTMPIERPK DCLIDNFLRS
501: SSFPVQDPGN GSSENRHVHP KLPNYDEIEA TFLALKKEKL QKKC

Best Arabidopsis Sequence Match ( AT2G14830.1 )
(BLAST)

001: MFCFLFGWRR TSKCKSVVKQ LQCRLNLLKN KKYAISSHLR NDIAQLLRIG ERDRALHRAQ QLFLDENLMS LYHLLLHFSD IILLNLSYIR RRRDLPDGIN
101: EAVSTLVFAS ARCGDLPELR ALRVLFGKRY GNHFVDTALN LLPGNCVNPQ VIEKLSIISV SDDAKSKLLG EIVEEYNLRL EVLAIEYTPE FHKQVLKSEK
201: AEEEKEVMSS NSAQPYCSSQ KAESEAEVYK FTLTDADIEE NQEQERKVCD EEDDCIEEEV VEEDQSVFRF RESTEDERKE RKRLRRKPRS TSSSSSPIAK
301: DVDCWRYYYK GKRSRQRKEC GKCCYHIVYN VFTMLPDQKE SEEGERSFKK AMHVHPKLPD YDQIVAHFTA LRKQQQQKQK HMRS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:TAIR;Acc:AT2G14830]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.