Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400069942 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | PGSC0003DMT400069942 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g043150.1.1 | Tomato | nucleus | 89.18 | 74.31 |
| PGSC0003DMT400014529 | Potato | nucleus | 46.12 | 43.56 |
| PGSC0003DMT400042551 | Potato | nucleus | 23.06 | 31.72 |
| KRG89505 | Soybean | mitochondrion | 12.47 | 28.04 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 11.76 | 27.93 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 11.06 | 27.17 |
| KRH23458 | Soybean | mitochondrion | 24.47 | 26.07 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 30.12 | 25.55 |
| CDY41108 | Canola | nucleus | 22.12 | 24.87 |
| Bra008502.1-P | Field mustard | nucleus | 22.12 | 24.8 |
| CDY37561 | Canola | nucleus | 21.88 | 24.67 |
| AT1G79910.1 | Thale cress | nucleus | 21.65 | 24.15 |
| KRH47048 | Soybean | mitochondrion | 21.41 | 23.82 |
| KRH44367 | Soybean | mitochondrion | 17.65 | 23.29 |
| CDX87282 | Canola | cytosol | 10.59 | 22.28 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 22.59 | 20.96 |
| PGSC0003DMT400022180 | Potato | nucleus | 24.94 | 19.2 |
| PGSC0003DMT400032944 | Potato | mitochondrion | 8.71 | 17.79 |
| EES04550 | Sorghum | nucleus | 25.88 | 16.11 |
| Zm00001d053852_P001 | Maize | nucleus | 25.88 | 16.06 |
| Os02t0159200-01 | Rice | nucleus | 25.41 | 16.0 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 24.47 | 15.45 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 24.0 | 15.22 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 24.94 | 14.87 |
| PGSC0003DMT400032356 | Potato | cytosol, mitochondrion | 9.18 | 14.83 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 24.94 | 14.83 |
| Os06t0687000-00 | Rice | mitochondrion | 25.41 | 14.81 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 24.71 | 14.69 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 24.24 | 14.53 |
| PGSC0003DMT400020212 | Potato | cytosol | 13.18 | 14.18 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 24.0 | 14.05 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 25.88 | 14.01 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 24.24 | 13.99 |
| Zm00001d014521_P001 | Maize | mitochondrion | 25.18 | 13.88 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 23.53 | 13.77 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 23.53 | 13.76 |
| PGSC0003DMT400003908 | Potato | plastid | 15.06 | 13.09 |
| PGSC0003DMT400033769 | Potato | mitochondrion | 11.29 | 11.24 |
| PGSC0003DMT400047266 | Potato | nucleus | 13.65 | 10.66 |
| PGSC0003DMT400070850 | Potato | cytosol | 13.18 | 10.61 |
| Zm00001d036913_P001 | Maize | cytosol | 11.76 | 8.18 |
| Zm00001d051744_P001 | Maize | nucleus | 8.47 | 7.17 |
| PGSC0003DMT400030456 | Potato | mitochondrion, nucleus, plastid | 13.88 | 5.44 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400092826 | EnsemblPlantsGene:PGSC0003DMG400042397 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 | PGSC:PGSC0003DMG400042397 | SEG:seg |
| UniParc:UPI0002953FD0 | UniProt:M1DQM2 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400042397]
Coordinates
chr12:-:50430478..50432207
Molecular Weight (calculated)
48497.5 Da
IEP (calculated)
10.010
GRAVY (calculated)
-1.124
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKQRECPEE CREAVSTLMF SAARLSDLPE LRELRDIFTE RYGNSLECFV NKEIVSKLKS QPPTKDMKLQ LMRDIAVESG VRWNSKALEH KLSKPQIAVQ
101: DLPKSHSSEE HKLHKKIDES AQRKEHQKAK INHENARIHT TSKTKREHHS SHGRKEVPGD VRSLPKGKEI GKQKRDSINR ASNRYLDDKP PAKDTKADII
201: GKNGQQNDPK IIKSVSEEKS DDNTPFYYRP IQPSYNKSSA CIVKISSDAS PTGTTGETHG HIEMNQRGVK IVKEEDSCVN DTIQKPKPKS VRTRLQPTHD
301: CEEDSDRRLR HGKHGIKIAS SDHVDQRDEE EKMMDRLLMH YTRKQASKNE VKKPKSVVKL AEVERSEVSR KRSIRVELKQ AGPPVTLREG DTQANRDMLS
401: PNGHIHPKMP DYDDFVTRLA ALKGN
101: DLPKSHSSEE HKLHKKIDES AQRKEHQKAK INHENARIHT TSKTKREHHS SHGRKEVPGD VRSLPKGKEI GKQKRDSINR ASNRYLDDKP PAKDTKADII
201: GKNGQQNDPK IIKSVSEEKS DDNTPFYYRP IQPSYNKSSA CIVKISSDAS PTGTTGETHG HIEMNQRGVK IVKEEDSCVN DTIQKPKPKS VRTRLQPTHD
301: CEEDSDRRLR HGKHGIKIAS SDHVDQRDEE EKMMDRLLMH YTRKQASKNE VKKPKSVVKL AEVERSEVSR KRSIRVELKQ AGPPVTLREG DTQANRDMLS
401: PNGHIHPKMP DYDDFVTRLA ALKGN
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.