Factsheet for PGSC0003DMT400069942

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001716
PGSC0003DMT400015190
PGSC0003DMT400016521
PGSC0003DMT400016765
PGSC0003DMT400027091
PGSC0003DMT400032840
PGSC0003DMT400042869
PGSC0003DMT400046635
PGSC0003DMT400050486
PGSC0003DMT400058456
PGSC0003DMT400066838
PGSC0003DMT400069942
PGSC0003DMT400070468
PGSC0003DMT400077344

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39760.1	PGSC0003DMT400016765	AT1G26830.1	15618422
AT2G39760.1	PGSC0003DMT400016765	AT1G26830.1	15659098
AT2G39760.1	PGSC0003DMT400016765	AT1G26830.1	15772280
AT2G39760.1	PGSC0003DMT400001716	AT1G52540.1	21798944
AT2G39760.1	PGSC0003DMT400016765	AT1G69670.1	15618422
AT2G39760.1	PGSC0003DMT400016765	AT1G69670.1	15659098
AT2G39760.1	PGSC0003DMT400069942	AT2G39760.1	15618422
AT2G39760.1	PGSC0003DMT400069942	AT2G39760.1	21798944
AT2G39760.1	PGSC0003DMT400042869	AT3G23700.1	21798944
AT2G39760.1	PGSC0003DMT400058456	AT3G43700.1	15618422
AT2G39760.1	PGSC0003DMT400070468	AT3G43700.1	15618422
AT2G39760.1	PGSC0003DMT400046635	AT3G54170.1	21798944
AT2G39760.1	PGSC0003DMT400066838	AT3G60390.1	21798944
AT2G39760.1	PGSC0003DMT400016521	AT4G14740.1	21798944
AT2G39760.1	PGSC0003DMT400077344	AT4G14900.1	21798944
AT2G39760.1	PGSC0003DMT400027091	AT4G22720.1	21798944
AT2G39760.1	PGSC0003DMT400015190	AT5G06270.1	21798944
AT2G39760.1	PGSC0003DMT400050486	AT5G06270.1	21798944
AT2G39760.1	PGSC0003DMT400032840	AT5G14440.1	21798944
AT2G39760.1	PGSC0003DMT400058456	AT5G21010.1	15618422
AT2G39760.1	PGSC0003DMT400070468	AT5G21010.1	15618422

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052960.2.1	Tomato	cytosol	98.04	98.04
VIT_13s0019g02260.t01	Wine grape	cytosol	76.96	77.34
GSMUA_Achr7P10650_001	Banana	cytosol	69.12	69.63
KRH31032	Soybean	nucleus	69.61	68.43
KRG97837	Soybean	cytosol	68.87	67.87
CDX93238	Canola	cytosol	64.95	66.92
Bra017053.1-P	Field mustard	cytosol	64.71	66.17
CDY07031	Canola	cytosol	64.71	66.17
Bra000147.1-P	Field mustard	cytosol	61.76	65.97
AT2G39760.1	Thale cress	cytosol	65.44	65.44
CDY07638	Canola	cytosol	62.99	64.25
TraesCS2A01G255800.1	Wheat	cytosol	61.76	63.64
TraesCS2D01G266900.1	Wheat	cytosol	61.52	63.38
Os07t0101400-01	Rice	cytosol	60.78	62.78
EER97813	Sorghum	plastid	60.78	61.69
CDY61778	Canola	cytosol	62.75	60.66
GSMUA_Achr10P...	Banana	cytosol	27.7	59.79
PGSC0003DMT400009802	Potato	plastid	59.07	59.07
HORVU2Hr1G064920.1	Barley	plastid	60.78	57.67
PGSC0003DMT400058456	Potato	cytosol	56.37	56.79
PGSC0003DMT400011115	Potato	plastid	54.66	54.79
PGSC0003DMT400070468	Potato	cytosol	54.17	54.17
Zm00001d007888_P002	Maize	plastid	55.15	52.33
CDX93236	Canola	cytosol	40.2	40.2

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:102595349	Gene3D:2.60.210.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BPM_C
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006950
GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0019538
GO:GO:0031396	GO:GO:0042802	GO:GO:0071472	InterPro:IPR000210	InterPro:IPR002083	InterPro:IPR008974
UniProt:M1CLF5	InterPro:MATH/TRAF_dom	PFAM:PF00651	EnsemblPlantsGene:PGSC0003DMG400027195	PGSC:PGSC0003DMG400027195	EnsemblPlants:PGSC0003DMT400069942
PFscan:PS50097	PFscan:PS50144	PANTHER:PTHR24411	PANTHER:PTHR24411:SF54	InterPro:SKP1/BTB/POZ_sf	SMART:SM00061
SMART:SM00225	SUPFAM:SSF49599	SUPFAM:SSF54695	InterPro:TRAF-like	UniParc:UPI0002956A2B	RefSeq:XP_006355691.1
SEG:seg	:	:	:	:	:

Description

Speckle-type POZ protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027195]

Coordinates

chr5:-:48247456..48252669

Molecular Weight (calculated)

45181.0 Da

IEP (calculated)

6.193

GRAVY (calculated)

-0.162

Length

408 amino acids

Sequence
(BLAST)

001: MNQISIDRAG NDSSSKSVNE TVNGSHHFTI RGYSLAKGMG PGKYISSDIF TVGGYDWAIY FYPDGKNIED SSMYVSVFIA LASEGTDVRA LFELTMLDQS
101: GKVKHKVHSH FDRALESGPY TLKYRGSMWG YKRFFRRASL EMSDYLKDDC LSMHCTVGVV RTRVEGPKDY SVTIPPSDMG QSLKYLLDAE LGCDIVFRVG
201: EEAFKGHKLI LAARSPVFRA QFFGLIGNPK TDEVEIEDIE PSVFKAMLQY IYSDELPDLI EITGSTSTCT STIVMQHLLA AADRFGLDRL KELCEAKLCE
301: EVNVDTVATT LSLAEQHRCP QLKAICLKFA ATNLGVVMQK DGFKHLEESC PLLLSELLET VASVDEKPSL TSSKKRSSSS SIFGLDLAAD GAAADSVNLT
401: VRRVRRRM

Best Arabidopsis Sequence Match ( AT2G39760.1 )
(BLAST)

001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS

Arabidopsis Description

BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.