Factsheet for PGSC0003DMT400016521

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082580.2.1	Tomato	cytosol	98.93	99.14
VIT_05s0020g04020.t01	Wine grape	nucleus	78.11	78.96
KRG91356	Soybean	cytosol	76.82	75.21
KRH35470	Soybean	nucleus	75.97	74.37
KRH69115	Soybean	nucleus	77.47	74.28
KRH31661	Soybean	nucleus	75.97	73.29
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	71.67	71.83
Bra039719.1-P	Field mustard	nucleus	71.46	71.61
Bra036892.1-P	Field mustard	nucleus	71.67	71.37
CDY36869	Canola	nucleus, plastid	26.18	70.11
CDY29764	Canola	nucleus	66.52	69.98
AT4G14740.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	70.82	69.47
Bra033702.1-P	Field mustard	cytosol, plastid	62.88	68.94
CDY16256	Canola	cytosol	58.8	68.5
GSMUA_Achr5P02990_001	Banana	nucleus	66.52	68.28
AT3G22810.1	Thale cress	cytosol	68.67	67.8
GSMUA_Achr4P21170_001	Banana	cytosol	52.36	66.48
GSMUA_AchrUn_...	Banana	nucleus	64.59	66.3
CDY22328	Canola	plastid	64.16	66.3
GSMUA_Achr7P07730_001	Banana	nucleus	63.3	66.29
AT5G43870.1	Thale cress	plastid	64.16	66.0
CDX94730	Canola	cytosol	63.52	65.92
CDY14898	Canola	cytosol	62.66	64.75
Bra036001.1-P	Field mustard	nucleus	62.45	64.52
Bra023803.1-P	Field mustard	cytosol	62.23	63.04
TraesCS5A01G377600.1	Wheat	nucleus	61.8	62.75
TraesCS5D01G387600.1	Wheat	nucleus	62.23	62.63
TraesCS5B01G381200.1	Wheat	nucleus	62.23	62.5
Zm00001d013705_P001	Maize	cytosol, nucleus, peroxisome	62.88	62.47
HORVU5Hr1G093460.2	Barley	nucleus	62.02	62.28
CDY36868	Canola	nucleus	30.69	62.17
KXG37970	Sorghum	cytosol	62.23	61.57
PGSC0003DMT400049811	Potato	plastid	63.52	61.28
Zm00001d033283_P001	Maize	cytosol	61.59	60.81
TraesCS5A01G056700.2	Wheat	nucleus	60.73	60.08
CDY46598	Canola	mitochondrion	62.23	60.04
TraesCS5D01G067900.2	Wheat	nucleus	60.52	60.0
TraesCS5B01G060100.2	Wheat	nucleus	60.3	59.91
Os03t0635800-01	Rice	nucleus	48.5	59.79
CDX96925	Canola	plastid	62.23	59.18
OQU79534	Sorghum	cytosol, mitochondrion, nucleus	61.8	59.02
Os12t0604200-00	Rice	nucleus	46.35	58.22
Zm00001d030661_P001	Maize	cytosol	57.08	57.58
GSMUA_Achr4P21160_001	Banana	cytosol	11.8	56.7
PGSC0003DMT400024848	Potato	cytosol	37.34	41.93
PGSC0003DMT400012161	Potato	nucleus	30.69	36.67
PGSC0003DMT400029034	Potato	cytosol	27.04	32.31

Protein Annotations

EnsemblPlants:PGSC0003DMT400016521	EnsemblPlantsGene:PGSC0003DMG400006453	EntrezGene:102600556	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF16	PFAM:PF05703	PFAM:PF08458
PGSC:PGSC0003DMG400006453	RefSeq:XP_006363478.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002962921	UniProt:M1A7T2
MapMan:35.1	:	:	:	:	:

Description

Ice binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006453]

Coordinates

chr9:+:54354468..54358211

Molecular Weight (calculated)

49278.7 Da

IEP (calculated)

9.725

GRAVY (calculated)

-0.255

Length

466 amino acids

Sequence
(BLAST)

001: MDQVQPMYRP PPPETPKEPM EFLSRSWSLS AFEVSKALAP PQVLPKSLFS GTPSYIGSGS GTIPEDIAAE LDESAIVSGN PFSFASSETS QLIMERIMSV
101: SQDVSPRTSG RLSHSSGPLN GGSLTDSPPV SPSEMDDSKY CRVNNVPVNN QYRSSATATS SAVTGGGGGG GGGKTVGRWL KDRREKKKEE MRAHNAQLHA
201: AVSVAGVAAA VAAIAAATAA SSGSGKDEQM AKTDMAVASA ATLVAAQCVE AAEAMGAERE HLASVVSSAV NVRSAGDIMT LTAAAATALR GAATLKARTL
301: KEVWNIAAVI PVDKGMGSGN GGGSNGSSSG ELIPEENFLG ICSRELLARG GELLKRTRKG DLHWKIVSVY INRTGQVMLK MKSRHVAGTI TKKKKNLVLE
401: VMKDIPAWPG RHLLPGSDNF KYFALKTVLR GVVEFECRDQ REYDLWTQGV SRLLSIAAEK NSRQKF

Best Arabidopsis Sequence Match ( AT3G22810.1 )
(BLAST)

001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI

Arabidopsis Description

Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.