CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36869	Canola	nucleus, plastid	37.2	99.43
Bra039719.1-P	Field mustard	nucleus	99.35	99.35
CDY36868	Canola	nucleus	46.88	94.78
CDY29764	Canola	nucleus	88.82	93.23
CDY16256	Canola	cytosol	76.99	89.5
AT4G14740.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	90.97	89.05
KRH35470	Soybean	nucleus	73.98	72.27
VIT_05s0020g04020.t01	Wine grape	nucleus	71.61	72.23
KRG91356	Soybean	cytosol	73.76	72.06
PGSC0003DMT400016521	Potato	nucleus	71.83	71.67
Solyc09g082580.2.1	Tomato	cytosol	71.4	71.4
CDY46598	Canola	mitochondrion	73.98	71.22
KRH31661	Soybean	nucleus	72.26	69.57
KRH69115	Soybean	nucleus	72.69	69.55
CDY22328	Canola	plastid	63.01	64.97
CDX94730	Canola	cytosol	62.58	64.81
GSMUA_Achr5P02990_001	Banana	nucleus	63.01	64.54
GSMUA_AchrUn_...	Banana	nucleus	62.8	64.32
GSMUA_Achr4P21170_001	Banana	cytosol	50.75	64.31
GSMUA_Achr7P07730_001	Banana	nucleus	61.51	64.27
CDY14898	Canola	cytosol	61.51	63.41
TraesCS5A01G377600.1	Wheat	nucleus	60.0	60.78
TraesCS5B01G381200.1	Wheat	nucleus	60.22	60.34
TraesCS5D01G387600.1	Wheat	nucleus	60.0	60.26
HORVU5Hr1G093460.2	Barley	nucleus	60.0	60.13
Zm00001d013705_P001	Maize	cytosol, nucleus, peroxisome	59.57	59.06
KXG37970	Sorghum	cytosol	59.57	58.81
Zm00001d033283_P001	Maize	cytosol	59.57	58.69
CDX93914	Canola	nucleus	61.51	58.25
CDY53717	Canola	nucleus	61.08	57.84
CDX96925	Canola	plastid	60.86	57.76
OQU79534	Sorghum	cytosol, mitochondrion, nucleus	59.78	56.97
TraesCS5A01G056700.2	Wheat	nucleus	57.63	56.9
TraesCS5D01G067900.2	Wheat	nucleus	57.42	56.81
TraesCS5B01G060100.2	Wheat	nucleus	57.2	56.72
Os03t0635800-01	Rice	nucleus	46.02	56.61
Zm00001d030661_P001	Maize	cytosol	55.27	55.63
Os12t0604200-00	Rice	nucleus	43.87	54.99
GSMUA_Achr4P21160_001	Banana	cytosol	11.4	54.64
CDX68890	Canola	cytosol	34.19	37.24
CDX75286	Canola	cytosol	33.98	37.0
CDY65120	Canola	cytosol	29.68	34.24
CDY64500	Canola	cytosol	29.68	34.24
CDY09634	Canola	nucleus	30.11	34.23
CDX77767	Canola	nucleus	27.31	31.28
CDY59298	Canola	nucleus	27.1	31.03
CDY32269	Canola	cytosol	24.09	29.63
CDY50798	Canola	cytosol, endoplasmic reticulum, nucleus	25.38	28.71
CDY40515	Canola	cytosol	27.1	28.7
CDY02766	Canola	cytosol	25.38	28.5
CDY51283	Canola	cytosol	24.73	28.05

Protein Annotations

EnsemblPlants:CDY50683	EnsemblPlantsGene:GSBRNA2T00097254001	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF16
PFAM:PF05703	PFAM:PF08458	ProteinID:CDY50683	ProteinID:CDY50683.1	SEG:seg	UniParc:UPI0004EE2FC7
UniProt:A0A078INL6	MapMan:35.1	:	:	:	:

Description

BnaA08g29430DBnaA08g29430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INL6]

Coordinates

chrLK032931:+:68920..72835

Molecular Weight (calculated)

50426.0 Da

IEP (calculated)

9.170

GRAVY (calculated)

-0.358

Length

465 amino acids

Sequence
(BLAST)

001: MERSMVPTWR PDPVYRPPET PLEPMEFLAR SWSASALEVS KALTPSDPQI LLSKTEEEPI LRDGDTEESG LVSGNPFSFA SSETSQMVMD RILSQSQEVS
101: PRTSGRLSHS SSGPLNGSLT DSPPPESDDI KQFIRANNSS LNNINCQFRS TATTPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI HAAVSVAGVA
201: AAVAAIAAAT AASSSAGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REHLAYVVSS AVNVRSAGDI MTLTAGAATA LRGVATLKAR AMKEVWNIAS
301: VIPMDKGLTT SGGCSNLNNG SNGSSSSSHS GELIQEDNFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKTNQVML KMKSKYVGKT FTKKKKNIVL
401: EVIKNVPAWP GRHLLEGGDD LRYFGLKTVL RGDVEFECKS QREYDMWTQG VSRLLVIAAE RRFRM

Best Arabidopsis Sequence Match ( AT4G14740.1 )
(BLAST)

001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM

Arabidopsis Description

Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.