Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G056700.2 | Wheat | nucleus | 98.94 | 98.73 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 97.87 | 98.08 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 77.87 | 75.0 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 72.98 | 74.08 |
| Zm00001d030661_P001 | Maize | cytosol | 72.13 | 73.38 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 66.81 | 69.16 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 14.26 | 69.07 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.26 | 66.52 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 62.98 | 66.52 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 50.64 | 64.85 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 61.91 | 63.12 |
| KRH67258 | Soybean | nucleus | 49.36 | 60.73 |
| PGSC0003DMT400016521 | Potato | nucleus | 60.0 | 60.52 |
| KRG91356 | Soybean | cytosol | 61.28 | 60.5 |
| Solyc09g082580.2.1 | Tomato | cytosol | 59.79 | 60.43 |
| KRH69115 | Soybean | nucleus | 62.34 | 60.29 |
| KRH31661 | Soybean | nucleus | 61.91 | 60.25 |
| KRH35470 | Soybean | nucleus | 60.43 | 59.66 |
| CDY36869 | Canola | nucleus, plastid | 21.7 | 58.62 |
| Bra033702.1-P | Field mustard | cytosol, plastid | 52.55 | 58.12 |
| Bra036892.1-P | Field mustard | nucleus | 57.45 | 57.69 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 56.81 | 57.42 |
| Bra039719.1-P | Field mustard | nucleus | 56.6 | 57.2 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 58.09 | 57.11 |
| CDY29764 | Canola | nucleus | 53.83 | 57.11 |
| CDX94730 | Canola | cytosol | 54.47 | 57.02 |
| CDY14898 | Canola | cytosol | 54.68 | 56.98 |
| Bra036001.1-P | Field mustard | nucleus | 54.47 | 56.76 |
| AT5G43870.1 | Thale cress | plastid | 54.68 | 56.73 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 57.23 | 56.63 |
| CDY22328 | Canola | plastid | 54.04 | 56.32 |
| CDY16256 | Canola | cytosol | 47.87 | 56.25 |
| AT3G22810.1 | Thale cress | cytosol | 56.17 | 55.93 |
| KRG95576 | Soybean | nucleus | 56.81 | 55.05 |
| KRH32056 | Soybean | nucleus | 56.17 | 54.89 |
| KRH71381 | Soybean | nucleus | 55.53 | 54.26 |
| Bra040444.1-P | Field mustard | plastid | 55.74 | 53.91 |
| CDY53717 | Canola | nucleus | 56.17 | 53.77 |
| CDX93914 | Canola | nucleus | 55.96 | 53.56 |
| Bra023803.1-P | Field mustard | cytosol | 52.13 | 53.26 |
| PGSC0003DMT400049811 | Potato | plastid | 54.68 | 53.21 |
| Solyc09g065590.2.1 | Tomato | plastid | 54.89 | 52.98 |
| AT3G63300.1 | Thale cress | plastid | 55.96 | 52.81 |
| CDX96925 | Canola | plastid | 54.04 | 51.84 |
| CDY46598 | Canola | mitochondrion | 52.13 | 50.72 |
| CDY36868 | Canola | nucleus | 24.04 | 49.13 |
| TraesCS6D01G232200.2 | Wheat | cytosol | 32.55 | 39.23 |
| TraesCS3D01G163000.1 | Wheat | cytosol | 32.98 | 36.22 |
| TraesCS4D01G363600.1 | Wheat | mitochondrion, nucleus | 30.21 | 35.86 |
| TraesCS1D01G222200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 30.43 | 34.46 |
| TraesCS2D01G352200.1 | Wheat | cytosol | 24.68 | 27.55 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G067900.2 | EnsemblPlantsGene:TraesCS5D01G067900 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF4 |
| PFAM:PF05703 | PFAM:PF08458 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5D:+:63510061..63514276
Molecular Weight (calculated)
49485.5 Da
IEP (calculated)
10.122
GRAVY (calculated)
-0.338
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGSGRASAR GGGDRLPPEP QRDPLEFLSR SWSASAADVS RAFAAAPAAG AIAEDIAGEL DDAASAGTGT GSSFSFASAA TSQLIMDRIM SHSQEVSPLT
101: SGRLSHSSGP LNGGGSFSDS PPVSPDVDDS RMQFCRAVST PKAQPPRGGS KTVGRWLKDK KEKRKEETRA HNAQVHAAVT VAAVAAAVAA AAAATAGSGG
201: KDDRAARTDM AMASAATLVA AQCVEAAESM GAEREHLAAA VGSAVNARTP GDIVTITAAA ATALRGAATL RARVQKEAWN VAAVIPVEKG SMGMGGHGHG
301: HKHGATQRQL QQQQPHHKVQ EMGSSNSSSF SDDLPAVDQD ENNFLGICCQ DLLARGIELL KRTRKGSLHW KVVSVYINRT GVVMLKMKSR HVAGTITKKK
401: KSVVVDVCRD LAAWPGRHLL EGGEHRRYFG LRTAEHRVIE FECASQREHD MWTKGVARLL AIVDGRKRFA
101: SGRLSHSSGP LNGGGSFSDS PPVSPDVDDS RMQFCRAVST PKAQPPRGGS KTVGRWLKDK KEKRKEETRA HNAQVHAAVT VAAVAAAVAA AAAATAGSGG
201: KDDRAARTDM AMASAATLVA AQCVEAAESM GAEREHLAAA VGSAVNARTP GDIVTITAAA ATALRGAATL RARVQKEAWN VAAVIPVEKG SMGMGGHGHG
301: HKHGATQRQL QQQQPHHKVQ EMGSSNSSSF SDDLPAVDQD ENNFLGICCQ DLLARGIELL KRTRKGSLHW KVVSVYINRT GVVMLKMKSR HVAGTITKKK
401: KSVVVDVCRD LAAWPGRHLL EGGEHRRYFG LRTAEHRVIE FECASQREHD MWTKGVARLL AIVDGRKRFA
001: MDQKSKTIGE QWWRSNPTFK PPETPLDSME FLSRTWSASA TEVSRAVVAS PPTSQPPQMR FSEIQNGSSD VTLVPEDEEN GIVLGNTFSF ASSETSLMVM
101: ERIMAQSPEI SSPRTSGRLS HSSFTDSPPI SPSDIDDFKQ FYRVSPSFNG HIRGSSAIPG TAGGSKTVGR WLKDRREKKR EETRAQNAQL HAAVSVAGVA
201: AAVAAIAAAT ASQSSSGTDE QVAKNDSAVA SAATLVAAKC VEAAEIMGAD REHLASVVSS AVNVRSAGDI MTLTAAAATA LRGAAQLKAR ALKEVWNIAA
301: VIPVDKGTPK GGGGGYRGGE LAPVDNFLGI CSKELLAKGC ELLKRTRKGD LHWKVVSIYI NRTKQVILKT KSKHVAGTIT KKKKNVVVGL VKGLPAWPGR
401: EMLEGGENLR YFGLKTVEKR VIEFECKSQR EYDLWTQGVS MLLSIASDRK HKC
101: ERIMAQSPEI SSPRTSGRLS HSSFTDSPPI SPSDIDDFKQ FYRVSPSFNG HIRGSSAIPG TAGGSKTVGR WLKDRREKKR EETRAQNAQL HAAVSVAGVA
201: AAVAAIAAAT ASQSSSGTDE QVAKNDSAVA SAATLVAAKC VEAAEIMGAD REHLASVVSS AVNVRSAGDI MTLTAAAATA LRGAAQLKAR ALKEVWNIAA
301: VIPVDKGTPK GGGGGYRGGE LAPVDNFLGI CSKELLAKGC ELLKRTRKGD LHWKVVSIYI NRTKQVILKT KSKHVAGTIT KKKKNVVVGL VKGLPAWPGR
401: EMLEGGENLR YFGLKTVEKR VIEFECKSQR EYDLWTQGVS MLLSIASDRK HKC
Arabidopsis Description
At5g43870 [Source:UniProtKB/TrEMBL;Acc:Q9LKC2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.