Factsheet for VIT_07s0151g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0150g00030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63300.1	VIT_01s0150g00030.t01	AT5G13300.1	19363154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67258	Soybean	nucleus	59.2	74.08
VIT_05s0020g04020.t01	Wine grape	nucleus	69.87	72.45
KRG95576	Soybean	nucleus	69.25	68.25
GSMUA_Achr5P02990_001	Banana	nucleus	64.23	67.62
PGSC0003DMT400049811	Potato	plastid	67.78	67.08
Solyc09g065590.2.1	Tomato	plastid	67.99	66.74
KRH71381	Soybean	nucleus	66.74	66.32
KRH32056	Soybean	nucleus	66.74	66.32
GSMUA_Achr7P07730_001	Banana	nucleus	61.09	65.62
GSMUA_AchrUn_...	Banana	nucleus	61.72	64.98
GSMUA_Achr4P21170_001	Banana	cytosol	49.16	64.03
GSMUA_Achr4P21160_001	Banana	cytosol	12.55	61.86
Bra040444.1-P	Field mustard	plastid	61.92	60.91
CDX93914	Canola	nucleus	62.55	60.9
TraesCS5A01G377600.1	Wheat	nucleus	58.37	60.78
HORVU5Hr1G093460.2	Barley	nucleus	59.0	60.78
CDY53717	Canola	nucleus	62.13	60.49
TraesCS5B01G381200.1	Wheat	nucleus	58.58	60.34
TraesCS5D01G387600.1	Wheat	nucleus	58.37	60.26
AT3G63300.1	Thale cress	plastid	62.76	60.24
KXG37970	Sorghum	cytosol	58.58	59.45
Zm00001d013705_P001	Maize	cytosol, nucleus, peroxisome	58.16	59.28
Zm00001d033283_P001	Maize	cytosol	58.16	58.9
OQU79534	Sorghum	cytosol, mitochondrion, nucleus	59.62	58.4
TraesCS5A01G056700.2	Wheat	nucleus	57.32	58.17
TraesCS5D01G067900.2	Wheat	nucleus	57.11	58.09
TraesCS5B01G060100.2	Wheat	nucleus	56.9	58.0
Zm00001d030661_P001	Maize	cytosol	55.86	57.79
Os03t0635800-01	Rice	nucleus	44.56	56.35
Os12t0604200-00	Rice	nucleus	43.31	55.8
VIT_04s0008g03570.t01	Wine grape	cytosol, nucleus, plastid	37.24	41.98
VIT_11s0037g01110.t01	Wine grape	cytosol	25.1	31.91
VIT_11s0037g01240.t01	Wine grape	cytosol	25.1	30.61

Protein Annotations

EntrezGene:100854030	wikigene:100854030	MapMan:35.1	EMBL:AM461272	ProteinID:CAN81204	ProteinID:CAN81204.1
ProteinID:CBI28737	ProteinID:CBI28737.3	UniProt:D7TE14	InterPro:DUF828	EMBL:FN595764	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733	GO:GO:0009734
GO:GO:0009987	GO:GO:0010087	GO:GO:0010305	InterPro:IPR001849	EntrezGene:LOC100854030	wikigene:LOC100854030
PFAM:PF05703	PFAM:PF08458	InterPro:PH_domain	InterPro:PH_pln	PFscan:PS50003	PANTHER:PTHR31351
PANTHER:PTHR31351:SF8	UniParc:UPI000198392C	ArrayExpress:VIT_07s0151g00290	EnsemblPlantsGene:VIT_07s0151g00290	EnsemblPlants:VIT_07s0151g00290.t01	RefSeq:XP_003632345
RefSeq:XP_003632345.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:844447..848048

Molecular Weight (calculated)

51179.6 Da

IEP (calculated)

9.407

GRAVY (calculated)

-0.351

Length

478 amino acids

Sequence
(BLAST)

001: MDHGIGIGGR LPETPPEPME FLSRSWSASA LQVSKALPPP PFPLSFPHPS FHSKAASSAT IPVHEDLAGE SEEPVTIAGN PFSFASSATS QLVLERIMSQ
101: SEVNAITPGR LSHSSGPLNG GQSCGGSLTE ETDSPPVSPS DEFDDVVKFF SANNTLQTQF FGGRSGPGSG GNTPGGGART VGRWLKDRRE KKKEESRAQN
201: AQLHAAVSVA GVAAAIAAMA AATAASSGSR KDEHMTKTDM AVASAATLVA AQCVEAAEAM GAERHHLASV VSSAVNVHSH DDILTLTAAA ATALRGAATL
301: KARALKEVWN VAAVIPVERG IGNGVSGNAN NTQPNGKNSS ETFPRENFIG VCSQELLARG SELLKRTRNG DLHWKMVFVY IHRTGQVMLK MKSRHVAGTI
401: TKKKKIVVLE VVKDMPAWPG RHLLEGGEQR HYFGLKTTPR GVVEFECRNQ REYDIWTQGV ERLLTIVAER RNRYREQK

Best Arabidopsis Sequence Match ( AT3G22810.1 )
(BLAST)

001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI

Arabidopsis Description

Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.