Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G63300.1 | KRH01512 | AT5G13300.1 | 19363154 |
| AT3G63300.1 | KRH45201 | AT5G13300.1 | 19363154 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG95576 | Soybean | nucleus | 96.86 | 76.29 |
| KRH71381 | Soybean | nucleus | 86.13 | 68.4 |
| KRH32056 | Soybean | nucleus | 85.6 | 67.98 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 74.08 | 59.2 |
| Os12t0604200-00 | Rice | nucleus | 55.24 | 56.87 |
| KRH31661 | Soybean | nucleus | 71.73 | 56.73 |
| KRG91356 | Soybean | cytosol | 70.42 | 56.51 |
| KRH35470 | Soybean | nucleus | 70.16 | 56.3 |
| KRH69115 | Soybean | nucleus | 71.47 | 56.17 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 14.14 | 55.67 |
| PGSC0003DMT400049811 | Potato | plastid | 69.9 | 55.28 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 65.44 | 55.07 |
| Solyc09g065590.2.1 | Tomato | plastid | 69.9 | 54.83 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 63.09 | 54.16 |
| Bra040444.1-P | Field mustard | plastid | 66.75 | 52.47 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 64.4 | 52.45 |
| CDX93914 | Canola | nucleus | 67.28 | 52.34 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 62.57 | 52.07 |
| AT3G63300.1 | Thale cress | plastid | 67.8 | 52.01 |
| CDY53717 | Canola | nucleus | 66.75 | 51.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 61.52 | 51.76 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 62.83 | 51.72 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 62.57 | 51.62 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 62.57 | 51.51 |
| Zm00001d033283_P001 | Maize | cytosol | 63.61 | 51.48 |
| KXG37970 | Sorghum | cytosol | 63.35 | 51.38 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 47.64 | 49.59 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 60.99 | 49.47 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 60.73 | 49.47 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 60.73 | 49.36 |
| Zm00001d030661_P001 | Maize | cytosol | 59.42 | 49.13 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 62.3 | 48.77 |
| Os03t0635800-01 | Rice | nucleus | 45.03 | 45.5 |
| KRH62055 | Soybean | cytosol, extracellular, nucleus, plastid | 37.43 | 34.62 |
| KRH52723 | Soybean | cytosol, extracellular, nucleus, plastid | 36.65 | 33.1 |
| KRH28119 | Soybean | nucleus | 30.89 | 30.18 |
| KRH04152 | Soybean | nucleus | 30.89 | 30.03 |
| KRH57434 | Soybean | nucleus | 30.1 | 29.19 |
| KRH77342 | Soybean | cytosol, endoplasmic reticulum, nucleus | 29.84 | 29.16 |
| KRH18946 | Soybean | nucleus | 27.23 | 26.87 |
| KRH02952 | Soybean | cytosol | 26.96 | 26.82 |
Protein Annotations
| EMBL:ACUP02002048 | EnsemblPlants:KRH67258 | EnsemblPlantsGene:GLYMA_03G157000 | EntrezGene:100805743 | InterPro:DUF828 | InterPro:PH_pln |
| PANTHER:PTHR31351 | PANTHER:PTHR31351:SF8 | PFAM:PF05703 | PFAM:PF08458 | ProteinID:KRH67258 | ProteinID:KRH67258.1 |
| SEG:seg | UniParc:UPI0006EDC077 | UniProt:A0A0R0KJZ9 | MapMan:35.1 | : | : |
Description
hypothetical protein
Coordinates
chr3:+:37234414..37238889
Molecular Weight (calculated)
40686.2 Da
IEP (calculated)
10.009
GRAVY (calculated)
-0.339
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQSAREEVS PLTSGRLSHS SEPLNGGGSL TGTDSPPISP SDEFDDVVKF FRANNSIHPL FNGGRTSATI GNGTACSGPK TVGRWLKERR EKKKEENRTH
101: NAQLHATISV AAVAAAVAAI AAATAAGSSA PSKDEKMAKT DMAVASAATL VAAQCVEAAE AMGAERDHLA SVVSSAVNVR SPDDITTLTA AAATALRGAA
201: TLKARALKEV WNIATVTPLE RGIGGIGLCG KSINSNTSNT STSDSGEIFN GENFLGSCSQ ELLAKGSELL KRTRKGDLHW KIVSVYIHRT GQVMLKMKSR
301: HVAGTITKKK KNVVLDICTD LPAWPGRHLL GDGEKRRYFG LKTDARGIVE FECRNQREYD LWTQGVSRLL SVVAQRQNRY GN
101: NAQLHATISV AAVAAAVAAI AAATAAGSSA PSKDEKMAKT DMAVASAATL VAAQCVEAAE AMGAERDHLA SVVSSAVNVR SPDDITTLTA AAATALRGAA
201: TLKARALKEV WNIATVTPLE RGIGGIGLCG KSINSNTSNT STSDSGEIFN GENFLGSCSQ ELLAKGSELL KRTRKGDLHW KIVSVYIHRT GQVMLKMKSR
301: HVAGTITKKK KNVVLDICTD LPAWPGRHLL GDGEKRRYFG LKTDARGIVE FECRNQREYD LWTQGVSRLL SVVAQRQNRY GN
001: MERELRRPNP INSSRRPEIF SSGGSSTQLP ESPRGPMEFL SRSWSVSALE VSRALHTAKS ASATNRPPSS INTPIPEETL NPEKEECPPE NSTSVSSQFS
101: FAASATSQLV LERIMSQSEV SPLTSGRLSH SSGPLNGGGS FTETDSPPIS PSDEFDDVIK YFRTHNTIHP LFSGTGGSRG TTGNGSNTPM AGTGPKTVGR
201: WLKDRKEKKK EETRTQNAQV HAAVSVAAVA SAVAAVAAAT AASSPGKNEQ MARIDMAMAS AAALVAAQCV EAAEIMGADR DHLTSVVSSA VNVKSHDDIV
301: TLTAAAATAL RGAATLKARA LKEVWNIAAV LPAEKGASSA LCGQVDTKHS DSSFSGELPV AGEDFLGVCN QELLAKGTEL LKRTRGGELH WKIVSVYINK
401: AGQAVLKMKS KHVGGTFTKK KKHMVLEVRK DIPAWAGRDL FNGDKHHYFG LKTETKRVIE FECRNQREYE IWTQGVSRLL AIAAEKKQKS SMSKWMAP
101: FAASATSQLV LERIMSQSEV SPLTSGRLSH SSGPLNGGGS FTETDSPPIS PSDEFDDVIK YFRTHNTIHP LFSGTGGSRG TTGNGSNTPM AGTGPKTVGR
201: WLKDRKEKKK EETRTQNAQV HAAVSVAAVA SAVAAVAAAT AASSPGKNEQ MARIDMAMAS AAALVAAQCV EAAEIMGADR DHLTSVVSSA VNVKSHDDIV
301: TLTAAAATAL RGAATLKARA LKEVWNIAAV LPAEKGASSA LCGQVDTKHS DSSFSGELPV AGEDFLGVCN QELLAKGTEL LKRTRGGELH WKIVSVYINK
401: AGQAVLKMKS KHVGGTFTKK KKHMVLEVRK DIPAWAGRDL FNGDKHHYFG LKTETKRVIE FECRNQREYE IWTQGVSRLL AIAAEKKQKS SMSKWMAP
Arabidopsis Description
VABVAN3-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.