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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • nucleus 3
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400005756

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G63300.1 PGSC0003DMT400005756 AT5G13300.1 19363154
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g065590.2.1 Tomato plastid 96.69 95.89
KRH67258 Soybean nucleus 55.28 69.9
VIT_07s0151g00290.t01 Wine grape nucleus 67.08 67.78
KRH32056 Soybean nucleus 64.18 64.45
KRH71381 Soybean nucleus 63.98 64.24
KRG95576 Soybean nucleus 63.98 63.71
PGSC0003DMT400016521 Potato nucleus 61.28 63.52
GSMUA_Achr5P02990_001 Banana nucleus 59.42 63.22
GSMUA_Achr7P07730_001 Banana nucleus 57.56 62.47
GSMUA_AchrUn_... Banana nucleus 58.18 61.89
GSMUA_Achr4P21170_001 Banana cytosol 47.0 61.85
GSMUA_Achr4P21160_001 Banana cytosol 12.22 60.82
Bra040444.1-P Field mustard plastid 60.87 60.49
CDX93914 Canola nucleus 61.08 60.08
CDY53717 Canola nucleus 60.87 59.88
AT3G63300.1 Thale cress plastid 61.28 59.44
TraesCS5A01G377600.1 Wheat nucleus 55.69 58.61
TraesCS5B01G381200.1 Wheat nucleus 55.69 57.97
TraesCS5D01G387600.1 Wheat nucleus 55.49 57.88
Zm00001d013705_P001 Maize cytosol, nucleus, peroxisome 56.11 57.78
HORVU5Hr1G093460.2 Barley nucleus 55.07 57.33
KXG37970 Sorghum cytosol 55.69 57.11
Zm00001d033283_P001 Maize cytosol 55.49 56.78
OQU79534 Sorghum cytosol, mitochondrion, nucleus 57.14 56.56
TraesCS5A01G056700.2 Wheat nucleus 53.42 54.78
TraesCS5D01G067900.2 Wheat nucleus 53.21 54.68
TraesCS5B01G060100.2 Wheat nucleus 53.0 54.58
Zm00001d030661_P001 Maize cytosol 52.17 54.55
Os03t0635800-01 Rice nucleus 41.61 53.17
Os12t0604200-00 Rice nucleus 40.58 52.83
PGSC0003DMT400024848 Potato cytosol 32.3 37.59
PGSC0003DMT400012161 Potato nucleus 26.5 32.82
PGSC0003DMT400029034 Potato cytosol 24.84 30.77
Protein Annotations
EnsemblPlants:PGSC0003DMT400049811EnsemblPlantsGene:PGSC0003DMG400019348GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0008150
GO:GO:0009719GO:GO:0009733GO:GO:0009734GO:GO:0009987GO:GO:0010087GO:GO:0010305
InterPro:DUF828InterPro:PH_plnPANTHER:PTHR31351PANTHER:PTHR31351:SF8PFAM:PF05703PFAM:PF08458
PGSC:PGSC0003DMG400019348SEG:segUniParc:UPI0002960326UniProt:M1BPD2MapMan:35.1:
Description
Ice binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019348]
Coordinates
chr9:+:48167778..48172942
Molecular Weight (calculated)
52111.6 Da
IEP (calculated)
9.445
GRAVY (calculated)
-0.392
Length
483 amino acids
Sequence
(BLAST)
001: MNLPESPKAP MEFLSRSWSA SALQVCKALT TTSSLSSSPS LTSKTNNNTN INSSSSVVVT IPENIIAVEE EDSANKLAGN TFSFASSATS QLVLDRIMSQ
101: SMHNGQEISP LTSGRLSHSS GPLNGSLTEE TDSSPVSPSE EFEDVVKYLK ANSTLQPLFT NVRTGYTGSA VGLAPNTPGG KTVGRWLKER REKKKEESRA
201: QNAQLHAVVS VAGVAASVAA IAAATASASS TGKDEQMAKT DAAVASAAML IAAQCVEAAE VMGADRDHLM SAISSAVNVR SHGDISTLTA AAATALRGAA
301: TLKARALKEV WNIAAVIPIE KGIGGGTGRN SDQNHSSNNN NNNNYCEGLD IEENFLGVCN QELLARGREL LKRTRNGDLH WKIVSVYLHR SGEVMLKMKS
401: KHVGKTITKK KKNVVTEVYK DVPAWPGRHL FEDGEKRRYF GLKTEIRGVV EFECKNQREY EMWTQGVSRL LSMVAERKKR FQH
Best Arabidopsis Sequence Match ( AT3G22810.1 )
(BLAST)
001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.