Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 3
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400005756 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G63300.1 | PGSC0003DMT400005756 | AT5G13300.1 | 19363154 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc09g065590.2.1 | Tomato | plastid | 96.69 | 95.89 |
KRH67258 | Soybean | nucleus | 55.28 | 69.9 |
VIT_07s0151g00290.t01 | Wine grape | nucleus | 67.08 | 67.78 |
KRH32056 | Soybean | nucleus | 64.18 | 64.45 |
KRH71381 | Soybean | nucleus | 63.98 | 64.24 |
KRG95576 | Soybean | nucleus | 63.98 | 63.71 |
PGSC0003DMT400016521 | Potato | nucleus | 61.28 | 63.52 |
GSMUA_Achr5P02990_001 | Banana | nucleus | 59.42 | 63.22 |
GSMUA_Achr7P07730_001 | Banana | nucleus | 57.56 | 62.47 |
GSMUA_AchrUn_... | Banana | nucleus | 58.18 | 61.89 |
GSMUA_Achr4P21170_001 | Banana | cytosol | 47.0 | 61.85 |
GSMUA_Achr4P21160_001 | Banana | cytosol | 12.22 | 60.82 |
Bra040444.1-P | Field mustard | plastid | 60.87 | 60.49 |
CDX93914 | Canola | nucleus | 61.08 | 60.08 |
CDY53717 | Canola | nucleus | 60.87 | 59.88 |
AT3G63300.1 | Thale cress | plastid | 61.28 | 59.44 |
TraesCS5A01G377600.1 | Wheat | nucleus | 55.69 | 58.61 |
TraesCS5B01G381200.1 | Wheat | nucleus | 55.69 | 57.97 |
TraesCS5D01G387600.1 | Wheat | nucleus | 55.49 | 57.88 |
Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 56.11 | 57.78 |
HORVU5Hr1G093460.2 | Barley | nucleus | 55.07 | 57.33 |
KXG37970 | Sorghum | cytosol | 55.69 | 57.11 |
Zm00001d033283_P001 | Maize | cytosol | 55.49 | 56.78 |
OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 57.14 | 56.56 |
TraesCS5A01G056700.2 | Wheat | nucleus | 53.42 | 54.78 |
TraesCS5D01G067900.2 | Wheat | nucleus | 53.21 | 54.68 |
TraesCS5B01G060100.2 | Wheat | nucleus | 53.0 | 54.58 |
Zm00001d030661_P001 | Maize | cytosol | 52.17 | 54.55 |
Os03t0635800-01 | Rice | nucleus | 41.61 | 53.17 |
Os12t0604200-00 | Rice | nucleus | 40.58 | 52.83 |
PGSC0003DMT400024848 | Potato | cytosol | 32.3 | 37.59 |
PGSC0003DMT400012161 | Potato | nucleus | 26.5 | 32.82 |
PGSC0003DMT400029034 | Potato | cytosol | 24.84 | 30.77 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400049811 | EnsemblPlantsGene:PGSC0003DMG400019348 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009987 | GO:GO:0010087 | GO:GO:0010305 |
InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF8 | PFAM:PF05703 | PFAM:PF08458 |
PGSC:PGSC0003DMG400019348 | SEG:seg | UniParc:UPI0002960326 | UniProt:M1BPD2 | MapMan:35.1 | : |
Description
Ice binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019348]
Coordinates
chr9:+:48167778..48172942
Molecular Weight (calculated)
52111.6 Da
IEP (calculated)
9.445
GRAVY (calculated)
-0.392
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLPESPKAP MEFLSRSWSA SALQVCKALT TTSSLSSSPS LTSKTNNNTN INSSSSVVVT IPENIIAVEE EDSANKLAGN TFSFASSATS QLVLDRIMSQ
101: SMHNGQEISP LTSGRLSHSS GPLNGSLTEE TDSSPVSPSE EFEDVVKYLK ANSTLQPLFT NVRTGYTGSA VGLAPNTPGG KTVGRWLKER REKKKEESRA
201: QNAQLHAVVS VAGVAASVAA IAAATASASS TGKDEQMAKT DAAVASAAML IAAQCVEAAE VMGADRDHLM SAISSAVNVR SHGDISTLTA AAATALRGAA
301: TLKARALKEV WNIAAVIPIE KGIGGGTGRN SDQNHSSNNN NNNNYCEGLD IEENFLGVCN QELLARGREL LKRTRNGDLH WKIVSVYLHR SGEVMLKMKS
401: KHVGKTITKK KKNVVTEVYK DVPAWPGRHL FEDGEKRRYF GLKTEIRGVV EFECKNQREY EMWTQGVSRL LSMVAERKKR FQH
101: SMHNGQEISP LTSGRLSHSS GPLNGSLTEE TDSSPVSPSE EFEDVVKYLK ANSTLQPLFT NVRTGYTGSA VGLAPNTPGG KTVGRWLKER REKKKEESRA
201: QNAQLHAVVS VAGVAASVAA IAAATASASS TGKDEQMAKT DAAVASAAML IAAQCVEAAE VMGADRDHLM SAISSAVNVR SHGDISTLTA AAATALRGAA
301: TLKARALKEV WNIAAVIPIE KGIGGGTGRN SDQNHSSNNN NNNNYCEGLD IEENFLGVCN QELLARGREL LKRTRNGDLH WKIVSVYLHR SGEVMLKMKS
401: KHVGKTITKK KKNVVTEVYK DVPAWPGRHL FEDGEKRRYF GLKTEIRGVV EFECKNQREY EMWTQGVSRL LSMVAERKKR FQH
001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.