Factsheet for PGSC0003DMT400005756

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400005756
PGSC0003DMT400049811
PGSC0003DMT400063615

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	PGSC0003DMT400049811	AT3G63300.1	19363154
AT5G13300.1	PGSC0003DMT400005756	AT5G13300.1	15743878
AT5G13300.1	PGSC0003DMT400063615	AT5G26980.1	15743878

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g023750.2.1	Tomato	cytosol	98.65	98.65
VIT_01s0150g00030.t01	Wine grape	cytosol	83.84	82.33
KRH45201	Soybean	cytosol	80.91	80.32
CDY09784	Canola	cytosol	76.38	78.2
KRH01512	Soybean	cytosol	79.56	77.47
AT5G13300.1	Thale cress	cytosol	78.21	77.27
CDX78515	Canola	cytosol	78.09	76.78
Bra006193.1-P	Field mustard	cytosol	76.25	76.63
CDX69650	Canola	cytosol	77.36	76.51
Bra008838.1-P	Field mustard	cytosol	77.11	76.27
Zm00001d049872_P001	Maize	cytosol	50.18	74.68
GSMUA_Achr11P...	Banana	cytosol	72.09	72.18
GSMUA_Achr4P00060_001	Banana	cytosol	71.97	70.25
TraesCS5A01G293000.1	Wheat	cytosol	70.5	69.31
Os09t0510700-01	Rice	cytosol	70.87	69.26
TraesCS5B01G292200.1	Wheat	cytosol	70.38	68.94
TraesCS5D01G300300.2	Wheat	cytosol	70.38	68.45
EER99172	Sorghum	cytosol	69.28	67.7
HORVU5Hr1G077570.15	Barley	cytosol	69.28	67.62
Zm00001d021087_P003	Maize	cytosol	69.28	67.62
OQU80812	Sorghum	cytosol	67.81	67.23
TraesCS7A01G263800.2	Wheat	cytosol	67.07	66.59
Zm00001d031667_P006	Maize	cytosol	66.95	66.46
HORVU7Hr1G055220.21	Barley	cytosol	66.95	65.82
Os08t0537600-01	Rice	plasma membrane	65.97	64.86
PGSC0003DMT400037441	Potato	cytosol	26.93	64.33
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	66.34	63.99
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	66.34	63.99
PGSC0003DMT400036762	Potato	cytosol	45.29	63.36
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	56.92	62.84
Zm00001d009353_P001	Maize	cytosol	9.18	61.98
Zm00001d015981_P001	Maize	peroxisome	11.02	58.82
CDY53619	Canola	cytosol	21.79	52.82
Zm00001d015278_P001	Maize	mitochondrion	21.3	51.79
Zm00001d004245_P003	Maize	cytosol	12.12	51.56
PGSC0003DMT400037443	Potato	cytosol	12.85	51.47
PGSC0003DMT400076862	Potato	cytosol	7.71	48.84
Zm00001d049871_P001	Maize	cytosol	10.53	45.03
PGSC0003DMT400068809	Potato	plastid	11.87	44.91
PGSC0003DMT400008126	Potato	cytosol	11.63	44.39
PGSC0003DMT400013119	Potato	cytosol	9.67	37.98
Zm00001d023982_P001	Maize	cytosol	16.03	33.68
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	8.32	28.94
PGSC0003DMT400049649	Potato	cytosol	11.26	19.37
PGSC0003DMT400064425	Potato	cytosol	10.89	18.9
PGSC0003DMT400012918	Potato	cytosol	9.79	17.2
PGSC0003DMT400028571	Potato	mitochondrion	8.94	15.9
PGSC0003DMT400045159	Potato	cytosol	7.71	15.29
PGSC0003DMT400023046	Potato	mitochondrion	8.69	15.2
PGSC0003DMT400002955	Potato	cytosol	7.34	14.78
CDY08879	Canola	cytosol	2.33	6.03

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	EntrezGene:102579830	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant
InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110
InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508	UniProt:M0ZQD9
PFAM:PF00169	PFAM:PF01412	PFAM:PF13637	PFAM:PF16746	EnsemblPlantsGene:PGSC0003DMG400002249	PGSC:PGSC0003DMG400002249
EnsemblPlants:PGSC0003DMT400005756	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115
PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374	SMART:SM00105	SMART:SM00233	SMART:SM00248
SMART:SM00721	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI00029541F3
RefSeq:XP_006343185.1	SEG:seg	:	:	:	:

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002249]

Coordinates

chr5:-:17572490..17583496

Molecular Weight (calculated)

91164.4 Da

IEP (calculated)

7.507

GRAVY (calculated)

-0.478

Length

817 amino acids

Sequence
(BLAST)

001: MHFGKLDDSP MFRKQLQCFE ESAESLRERS LKFYKGCRKY TEGLGEGYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLNDRLLQF VNIDLQDVKE ARKRFDKASL IYDQAREKFL SLRKGTKSDV ASLLEEELHN ARSTFEQARF SLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEKAALNEK MQEYKRQVDR ESRWLSNGSN GSPNGDGIQA IGRSSHKQIE AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQN TKPSGSGSQH SGQRNSSELG SGLLSRWLSS HYHGGVHDEK SVAHHTVNLL TSTIKVDADQ SDLRFCFRII
401: SPTKSYTLQA ESALDQMDWI EKITGVIASL LSSQAPDRCL TASPMGSGHH RSASESSSFE SSDFDPPAVE DHPSDRLISA HHDRPFRNSQ QLRSAPKTEQ
501: PIATLRRVCG NDRCADCGAA EPDWASLNLG VLVCIECSGV HRNLGVHISK VRSLTLDVKV WEPSVIALFQ SLGNTFANSV WEESLQARGA FQVNVSAASS
601: YRSDKQQQLY ISKPSHADPI STKEKFIHAK YADKSFVRRT KDGHTAAQMM WEAVRANDKK AVYRLIVSSE ADVNALYRQV VSNSSLTLAK VMLLQEQPYT
701: DQSSTCLEMD LASPSERLIV GDFDGCSLLH LACETADLGM LELLMQYGAN VNASDSSGQT PLHWCIIRGK AAFAKLLLAR GADPHALDGE SKTPYDLALG
801: SNFDDVDVLN LLSDANA

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.