Factsheet for PGSC0003DMT400008126

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076862	Potato	cytosol	37.38	62.02
PGSC0003DMT400013119	Potato	cytosol	51.87	53.37
PGSC0003DMT400068809	Potato	plastid	22.9	22.69
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	20.56	18.72
Solyc04g008660.2.1	Tomato	cytosol	64.49	17.67
AT1G60860.1	Thale cress	cytosol	49.53	13.66
CDX97917	Canola	cytosol	49.07	13.65
Bra019896.1-P	Field mustard	cytosol	49.07	13.64
AT1G10870.2	Thale cress	cytosol	49.07	13.46
CDY19326	Canola	cytosol	48.13	13.39
GSMUA_Achr1P01960_001	Banana	cytosol	48.13	13.15
KRH24228	Soybean	cytosol	47.66	13.14
KRH29237	Soybean	cytosol	47.66	13.14
HORVU6Hr1G059210.10	Barley	cytosol, plastid	42.52	12.85
PGSC0003DMT400036762	Potato	cytosol	35.05	12.84
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	42.52	12.71
CDY40502	Canola	cytosol	44.86	12.58
Os02t0632500-01	Rice	cytosol, plasma membrane	43.46	12.24
Zm00001d051187_P009	Maize	plastid	40.19	12.2
TraesCS6B01G259800.1	Wheat	cytosol	43.46	12.13
TraesCS6D01G213800.1	Wheat	cytosol	42.99	12.06
TraesCS6A01G221400.1	Wheat	cytosol	42.52	11.93
PGSC0003DMT400037441	Potato	cytosol	18.69	11.7
PGSC0003DMT400005756	Potato	cytosol	44.39	11.63
Bra027124.1-P	Field mustard	cytosol	40.65	11.43
CDY54764	Canola	cytosol	40.65	11.42
OQU85359	Sorghum	cytosol, mitochondrion, plastid	44.39	11.32
PGSC0003DMT400049649	Potato	cytosol	22.43	10.11
PGSC0003DMT400064425	Potato	cytosol	21.96	9.98
PGSC0003DMT400012918	Potato	cytosol	21.5	9.89
PGSC0003DMT400002955	Potato	cytosol	18.22	9.61
PGSC0003DMT400045159	Potato	cytosol	17.29	8.98
PGSC0003DMT400028571	Potato	mitochondrion	17.29	8.06
PGSC0003DMT400023046	Potato	mitochondrion	16.36	7.49
PGSC0003DMT400037443	Potato	cytosol	7.01	7.35
Zm00001d051188_P001	Maize	cytosol	0.93	1.52

Protein Annotations

Gene3D:3.30.40.160	MapMan:35.1	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:M0ZU42	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400003134	PGSC:PGSC0003DMG400003134
EnsemblPlants:PGSC0003DMT400008126	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF244	SMART:SM00105
SUPFAM:SSF57863	UniParc:UPI0002967DC2	:	:	:	:

Description

Arf GTPase-activating domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003134]

Coordinates

chr8:+:23765872..23775782

Molecular Weight (calculated)

24139.7 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.244

Length

214 amino acids

Sequence
(BLAST)

001: MARSPGSYIE EIVREFYASY AATLRGSIDR RVKPASQPPL RDTLVRGYSV DISEATIHRF LYDPGHTLVI NMGKFDYRWD IIQREVPRND KCSDCGASEP
101: DWASLHLGIL ICIECSSIHR NLGVHISKVR SILLDVRVWE PTILDLFRTL GNSYCNSVWE ELLQLPSDGL TNVDAIQSAS KPSPKDAFHE KEKYILAKAD
201: EQVNSPFALG FQIG

Best Arabidopsis Sequence Match ( AT1G60860.1 )
(BLAST)

001: MAGFINLEDS PMFQKQVFSL EGTSDELKDR CQKLYKGVKK FMGALGEAST GVSAFADSLE EFGAGHDDPV SVSIGGPVIS KFINTLRELS SYKEFLRSQV
101: EHVLLERLTN FMTVDLQEAK ESRRRFDKAV HSYDQAREKF VSLKKNTRGD IVAELEEDLE NSKSAFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDSHF
201: KYFKLGYDLL SQLEPYIHQV LTYAQQSKEQ SKIEQDRFAQ RIQEFRTQSE LDSQQASAKA DPSDVGGNHV YRAIPRKNVE ANSVSTADKE VTKQGYLLKR
301: SASLRADWKR RFFVLDNHGS LYYYRNTGNK SAKSQHYYSG LGEHSSGVFG RFRTRHNRSA SQGSLDCNMI DLRTSLIKLD AEDTDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITAAI TIRLNSHFLQ QSPARYLDKK NTSSGPATEN LTLNQKEDYN QRLNVGDDVL TILREIPGNN TCAECNAPDP DWASLNLGVL
501: MCIECSGVHR NLGVHISKVR SLTLDVKVWE PTILDLFRNL GNGYCNSVWE ELLHHLDDDS EKGSTDTLAS VSKPSSEDWF TLKEKYINGK YLEKALVVKD
601: EREANSTASS RIWEAVQSRN IRDIYRLIVK ADANIINTKF DDITDLDVYH HHHVDAPDEV KKRHDPNACQ RIKNSNEARN CLQGCSLLHV ACQSGDPILL
701: ELLLQFGADI NMRDYHGRTP LHHCIASGNN AFAKVLLRRG ARPSIEDGGG LSVLERAMEM GAITDEELFL LLAECQ

Arabidopsis Description

AGD2ADP-ribosylation factor GTPase-activating protein AGD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.