Factsheet for Bra019896.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97917	Canola	cytosol	99.22	99.35
CDY19326	Canola	cytosol	98.31	98.44
AT1G10870.2	Thale cress	cytosol	91.43	90.26
Bra027124.1-P	Field mustard	cytosol	77.79	78.71
KRH29237	Soybean	cytosol	64.16	63.66
KRH24228	Soybean	cytosol	64.03	63.53
Solyc04g008660.2.1	Tomato	cytosol	60.65	59.8
GSMUA_Achr1P01960_001	Banana	cytosol	56.1	55.17
Os02t0632500-01	Rice	cytosol, plasma membrane	53.9	54.61
TraesCS6A01G221400.1	Wheat	cytosol	54.03	54.52
TraesCS6D01G213800.1	Wheat	cytosol	53.9	54.39
TraesCS6B01G259800.1	Wheat	cytosol	53.77	53.98
PGSC0003DMT400076862	Potato	cytosol	8.96	53.49
Zm00001d051188_P001	Maize	cytosol	9.09	53.03
OQU85359	Sorghum	cytosol, mitochondrion, plastid	55.45	50.89
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	46.36	49.86
HORVU6Hr1G059210.10	Barley	cytosol, plastid	45.84	49.86
PGSC0003DMT400008126	Potato	cytosol	13.64	49.07
Zm00001d051187_P009	Maize	plastid	43.9	47.94
PGSC0003DMT400013119	Potato	cytosol	12.47	46.15
Bra008838.1-P	Field mustard	cytosol	46.1	42.98
Bra006193.1-P	Field mustard	cytosol	44.29	41.94
Bra010046.1-P	Field mustard	cytosol	39.87	38.81
Bra029295.1-P	Field mustard	cytosol	42.86	38.28
Bra021263.1-P	Field mustard	cytosol	7.53	21.17
Bra024999.1-P	Field mustard	cytosol	8.05	16.99
Bra002995.1-P	Field mustard	cytosol	10.0	16.24
Bra029030.1-P	Field mustard	cytosol	10.0	16.11
Bra022711.1-P	Field mustard	cytosol	9.87	16.1
Bra013265.1-P	Field mustard	cytosol	8.05	15.74
Bra017179.1-P	Field mustard	cytosol	7.66	13.38
Bra005187.1-P	Field mustard	cytosol	7.66	13.38
Bra039812.1-P	Field mustard	cytosol	7.79	13.3
Bra017330.1-P	Field mustard	cytosol	6.49	12.69
Bra000005.1-P	Field mustard	mitochondrion	7.79	12.58
Bra007020.1-P	Field mustard	cytosol	7.4	12.56
Bra026910.1-P	Field mustard	plastid	1.69	7.18
Bra012634.1-P	Field mustard	cytosol	7.79	5.87

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	Gene3D:2.30.29.30	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant
InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	EnsemblPlantsGene:Bra019896	EnsemblPlants:Bra019896.1	EnsemblPlants:Bra019896.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR011993	InterPro:IPR020683
InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508	UniProt:M4DTQ3	PFAM:PF00169	PFAM:PF01412
PFAM:PF12796	PFAM:PF16746	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003
PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF244	SMART:SM00105
SMART:SM00233	SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729
SUPFAM:SSF57863	UniParc:UPI000253EA9E	:	:	:	:

Description

AT1G10870 (E=0.0) AGD4 | AGD4 (ARF-GAP domain 4); ARF GTPase activator/ protein binding / zinc ion binding

Coordinates

chrA06:-:3821794..3826525

Molecular Weight (calculated)

86585.8 Da

IEP (calculated)

6.577

GRAVY (calculated)

-0.439

Length

770 amino acids

Sequence
(BLAST)

001: MATFINLEDS PMFQKQVCSL EGTAEELKDR CQKLYKGVKK FMGVLGEASK GESAFADCLE EFGAGHDDPI SLSIGGPVIS KFINTLRELA SYKEFLCSQV
101: EHVLLERLMN FINVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL GQLEPYIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLAANA EVSGVNGNRV VGTIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRNNGNKSM GSQHHYSGSS DHTGVFGRFR ARHNRSASLT EGSLGYKTID LRTCLIKLDA EDMDLRLCFR IISPQKTYTL
401: QAENGADRMD WVNKITAAIG TLLNSHFLQQ SPVQYTGSVP PKGVVSMDQS QHNDARRNMG DDVSTILRGI PGNNVCAECN APDPDWASLN LGVLLCIQCS
501: GVHRNLGVHI SKVRSLTLDV KVWEPTILDL FRNLGNLYCN SLWEGLLHLD DDSENESTLS RASISKPSPD DSFTVKEKYI LAKYLEKALV IKDESKGNPS
601: SAACRIWEAV QSRNIREIYR LIVTSGDVNI INTKFDDITD LDAYHHADAS EEGVKKRRDP TACQRIKDSN EPGNCLQGCS LLHVACHIGD SVLLELLLQF
701: GADPNMRDYH GRTPLHHCIS SGNHKFAKIL LRRGARPSIE DDGGLSVLER AMEMGAITDE ELFLLLAECA

Best Arabidopsis Sequence Match ( AT1G10870.1 )
(BLAST)

001: MATFINLEDS PMFQKQVCSL EGTADELKDR CQKLYKGVKK FMGTLGEASK GESAFAACLE EFGGGPDDPI SLSIGGPVIS KFINALRELA SYKEFLCSQV
101: EHVLLERLMN FISVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITKAI GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN ACAECNAPEP DWASLNLGVL
501: LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL GNVYCNSLWE GLLHLDDDCE DGSALSHASV SKPCPEDSFS VKEKYILGKY LEKALVIKDE
601: SEANLSAASR IWEAVQSRNI REIYRLIVTT GDVNIINTKF DDITDIDAYH HIDAAEKAVK KRHDPTVCQR IKESNEPRSC LQGCSLLHVA CHIGDSVLLE
701: LLLQFGADLN IRDYHGRTPL HHCISSGNHK FAKILLRRGA RPSIEDDGGL SVLERAMEMG AITDEELFLL LAECA

Arabidopsis Description

AGD4ARF-GAP domain 4 [Source:TAIR;Acc:AT1G10870]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.