Factsheet for Bra002995.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63834	Canola	cytosol	99.79	99.79
CDY64205	Canola	endoplasmic reticulum	95.15	91.48
Bra022711.1-P	Field mustard	cytosol	88.19	88.56
Bra029030.1-P	Field mustard	cytosol	87.55	86.82
AT5G54310.1	Thale cress	cytosol	86.5	84.89
VIT_19s0014g03510.t01	Wine grape	cytosol	62.66	62.13
Solyc07g063550.2.1	Tomato	cytosol	59.49	59.37
PGSC0003DMT400049649	Potato	cytosol	59.49	59.37
KRH22157	Soybean	cytosol	59.49	58.63
KRH27179	Soybean	cytosol	59.28	58.06
KRH26038	Soybean	cytosol	59.92	56.8
PGSC0003DMT400064425	Potato	cytosol	51.48	51.8
KRH55419	Soybean	cytosol	54.43	50.0
KRH30767	Soybean	nucleus	25.53	49.79
Solyc10g006850.2.1	Tomato	cytosol	51.9	49.2
Bra021263.1-P	Field mustard	cytosol	24.89	43.07
Zm00001d016547_P001	Maize	cytosol, plastid	29.75	26.5
Zm00001d046873_P001	Maize	cytosol, plastid	29.75	26.5
Zm00001d051030_P001	Maize	cytosol, plastid	29.75	26.5
Bra039812.1-P	Field mustard	cytosol	17.93	18.85
Bra005187.1-P	Field mustard	cytosol	17.51	18.82
Bra013265.1-P	Field mustard	cytosol	15.61	18.78
Bra024999.1-P	Field mustard	cytosol	14.35	18.63
Bra017179.1-P	Field mustard	cytosol	17.3	18.59
Bra007020.1-P	Field mustard	cytosol	17.51	18.28
Bra000005.1-P	Field mustard	mitochondrion	18.35	18.24
Bra017330.1-P	Field mustard	cytosol	14.35	17.26
Bra026910.1-P	Field mustard	plastid	4.85	12.71
Bra010046.1-P	Field mustard	cytosol	17.93	10.75
Bra006193.1-P	Field mustard	cytosol	18.14	10.58
Bra008838.1-P	Field mustard	cytosol	18.14	10.41
Bra029295.1-P	Field mustard	cytosol	18.35	10.09
Bra019896.1-P	Field mustard	cytosol	16.24	10.0
Bra027124.1-P	Field mustard	cytosol	13.71	8.54
Bra012634.1-P	Field mustard	cytosol	15.61	7.23

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	EnsemblPlantsGene:Bra002995
EnsemblPlants:Bra002995.1	EnsemblPlants:Bra002995.1-P	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150
GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	UniProt:M4CFL3
PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105
SUPFAM:SSF57863	UniParc:UPI0002543EBA	SEG:seg	:	:	:

Description

AT5G54310 (E=2e-187) AGD5 | AGD5 (ARF-GAP domain 5); ARF GTPase activator/ DNA binding / zinc ion binding

Coordinates

chrA10:-:6189176..6192894

Molecular Weight (calculated)

51498.5 Da

IEP (calculated)

8.310

GRAVY (calculated)

-0.674

Length

474 amino acids

Sequence
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGNE RANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR RSVERTGPLY EHGHSSSPVN LFEEKKTVQA SRTRNSGSAT RISLPVPPQG PGQVIKPQQK
201: TESVAAPVET AKPAVNVPAP EPPKVDFATD LFNMLSMDEP TANTSEAAPA DDNSWAGFQS AGNGQTAEKS VTPKPDESSS PPATGIEDLF KDSPTLIAQQ
301: TPQKDVKGDI MSLFEKTNIV SPFAMHQQQV AMLAQQQALY MAAAAKAAGG IPNGVNQQAI ANALSLASAN WSNTGYQVPG MTNPGGGQAD LQKLMQNMNM
401: NVRPGQQQEN TLQYPMSSSY GTGQVNPATN GMTPNSTGKP QSSTSSQPTS TTPASQLSKD FDFSSLMDGM FTKH

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.