CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30767	Soybean	nucleus	49.48	97.94
KRH27179	Soybean	cytosol	92.31	91.74
KRH26038	Soybean	cytosol	78.17	75.2
VIT_19s0014g03510.t01	Wine grape	cytosol	65.28	65.69
KRH55419	Soybean	cytosol	69.02	64.34
Solyc07g063550.2.1	Tomato	cytosol	63.41	64.21
PGSC0003DMT400049649	Potato	cytosol	62.58	63.37
Bra002995.1-P	Field mustard	cytosol	58.63	59.49
CDY63834	Canola	cytosol	58.42	59.28
AT5G54310.1	Thale cress	cytosol	59.46	59.21
CDY52243	Canola	cytosol	57.38	58.6
Bra022711.1-P	Field mustard	cytosol	56.96	58.05
CDY43044	Canola	cytosol	57.38	57.74
CDY43831	Canola	cytosol	57.59	57.47
Bra029030.1-P	Field mustard	cytosol	56.76	57.11
PGSC0003DMT400064425	Potato	cytosol	55.3	56.48
CDY64205	Canola	endoplasmic reticulum	55.51	54.16
KRH15700	Soybean	cytosol	21.83	54.12
Solyc10g006850.2.1	Tomato	cytosol	55.72	53.6
CDY28774	Canola	endoplasmic reticulum, plasma membrane	54.89	53.55
KRH38902	Soybean	cytosol	23.7	46.91
KRH09434	Soybean	cytosol	23.28	45.9
KRH41906	Soybean	cytosol	25.57	41.14
Zm00001d016547_P001	Maize	cytosol, plastid	30.56	27.63
Zm00001d046873_P001	Maize	cytosol, plastid	30.56	27.63
Zm00001d051030_P001	Maize	cytosol, plastid	30.56	27.63
KRH75607	Soybean	cytosol	17.88	21.34
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	17.67	21.09
KRG95812	Soybean	endoplasmic reticulum	17.88	17.59
KRH67539	Soybean	mitochondrion	17.67	17.49
KRH32302	Soybean	mitochondrion	16.63	16.7
KRH19707	Soybean	cytosol	16.63	16.63
KRH63858	Soybean	cytosol	17.67	10.83
KRH45201	Soybean	cytosol	18.3	10.69
KRH01512	Soybean	cytosol	18.5	10.61
KRH59741	Soybean	cytosol	17.05	10.25
KRH29237	Soybean	cytosol	16.22	10.05
KRH24228	Soybean	cytosol	16.01	9.92
KRH54108	Soybean	cytosol	14.97	9.76

Protein Annotations

EntrezGene:100789910	MapMan:22.3.4.2	Gene3D:3.30.40.160	EMBL:ACUP02008388	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G281400	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488
GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	UniProt:I1M3D5	InterPro:IPR001164
InterPro:IPR038508	EnsemblPlants:KRH22157	ProteinID:KRH22157	ProteinID:KRH22157.1	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI000233B964
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:38284526..38289393

Molecular Weight (calculated)

52333.9 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.627

Length

481 amino acids

Sequence
(BLAST)

001: MNSKANVSKE LNAKHKKILE GLLKLPENRE CADCKAKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGNE KANCFWEAEL
101: PPNYDRVGIE NFIRAKYDEK RWVPRDGNSK TPSGFREEKS PSHWQRPVER SGYAAVSENK FEERKKIQPS TAIPAARINV PAPPRAPEQV TPITKPQHVE
201: KVESVAPQPQ APQPLAETSK QATDTVKNNP PKVDYATDLF NMLSMDGPNE NGSEAAGTTT DDNHWAGFQS AAEVSTAEKT SPLKAADSTP GSASGIEDLF
301: KDLHPVTPSL TPEKPQKDVK NDIMSLFEKG NMVSPFSMHQ QQLAMLAQQQ SLLMASAAKS SGGDPRYPAS IQQPRPNVPI QSWPATGYSI PGVMPMGGQG
401: ELQKLVQGQT RNMTPAHFAG SSVQYPPSSF YGMGQVPPPV NGMTMGVSKP QSGAPAVSST TSQSAKDYDF SSLTQGMFMK Q

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.