Factsheet for VIT_19s0014g03510.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049649	Potato	cytosol	65.69	66.11
Solyc07g063550.2.1	Tomato	cytosol	65.27	65.68
KRH22157	Soybean	cytosol	65.69	65.28
KRH27179	Soybean	cytosol	65.69	64.88
KRH26038	Soybean	cytosol	66.53	63.6
CDY52243	Canola	cytosol	62.13	63.06
CDY63834	Canola	cytosol	62.34	62.87
Bra002995.1-P	Field mustard	cytosol	62.13	62.66
CDY43044	Canola	cytosol	62.34	62.34
Bra029030.1-P	Field mustard	cytosol	62.34	62.34
Bra022711.1-P	Field mustard	cytosol	61.51	62.29
CDY43831	Canola	cytosol	62.34	61.83
PGSC0003DMT400064425	Potato	cytosol	59.83	60.72
AT5G54310.1	Thale cress	cytosol	60.88	60.25
KRH30767	Soybean	nucleus	30.13	59.26
VIT_00s0404g00040.t01	Wine grape	cytosol	61.3	57.79
CDY28774	Canola	endoplasmic reticulum, plasma membrane	59.0	57.2
CDY64205	Canola	endoplasmic reticulum	58.79	57.0
Solyc10g006850.2.1	Tomato	cytosol	59.41	56.8
KRH55419	Soybean	cytosol	59.2	54.84
VIT_17s0053g00430.t01	Wine grape	cytosol	26.36	48.84
Zm00001d051030_P001	Maize	cytosol, plastid	32.43	29.14
Zm00001d046873_P001	Maize	cytosol, plastid	32.43	29.14
Zm00001d016547_P001	Maize	cytosol, plastid	32.43	29.14
VIT_02s0012g01330.t01	Wine grape	cytosol	17.57	20.74
VIT_08s0007g00010.t01	Wine grape	mitochondrion	19.25	19.78
VIT_00s0250g00050.t01	Wine grape	plastid	15.27	17.02
VIT_01s0150g00030.t01	Wine grape	cytosol	17.36	9.98
VIT_17s0000g00310.t01	Wine grape	cytosol	17.15	9.92
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	9.62	6.42

Protein Annotations

EntrezGene:100262374	wikigene:100262374	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	ProteinID:CBI20369	ProteinID:CBI20369.3	UniProt:E0CSS0	EMBL:FN595229	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	EntrezGene:LOC100262374	wikigene:LOC100262374	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	TIGR:TC68940
UniParc:UPI00015C78E7	ArrayExpress:VIT_19s0014g03510	EnsemblPlantsGene:VIT_19s0014g03510	EnsemblPlants:VIT_19s0014g03510.t01	unigene:Vvi.12335	RefSeq:XP_002284562
RefSeq:XP_002284562.1	RefSeq:XP_003634688	RefSeq:XP_003634688.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:3640059..3650269

Molecular Weight (calculated)

51705.7 Da

IEP (calculated)

7.285

GRAVY (calculated)

-0.698

Length

478 amino acids

Sequence
(BLAST)

001: MNEKANVTKE LNARHRKILE GLLKLPENRE CADCKSKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGNE KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEDK RWIPKDGKPR STSQGREEKA SAHWHRPGDR GGSGNTSNSE NSFEEKKNVQ APSIKDNGPA TRISLPVPPK GPEPVAPIPK
201: PHQVTQKPEP SVPQAESAKQ AADSTPVVPP PKVDYATDLF NMLSMDDPTE NGSEAASADD NAWAGFQSAE QTSTAEKTAP AKPIEGNTQS TSGIEDLFKD
301: SPSIMPAASD KPQKDVKNDI MSLFEKSNMV SPFSLHQQQL AMLAQQQSLL MAAAAKSTGV APKFSINAQQ HSSNGTDLPT QNWPNMGYQI PGMMMQAAGN
401: NDMQKFMQAA NMGPTHPAGN SVPFATSSMY TMGQVAPTNG VATTSVSRPP SASPATPPTQ PGKEYDFSSL TQGMFSKP

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.