Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43044 | Canola | cytosol | 86.34 | 87.24 |
| Bra002995.1-P | Field mustard | cytosol | 84.89 | 86.5 |
| Bra029030.1-P | Field mustard | cytosol | 85.51 | 86.4 |
| CDY63834 | Canola | cytosol | 84.68 | 86.29 |
| CDY52243 | Canola | cytosol | 84.06 | 86.2 |
| Bra022711.1-P | Field mustard | cytosol | 83.23 | 85.17 |
| CDY43831 | Canola | cytosol | 84.47 | 84.65 |
| CDY64205 | Canola | endoplasmic reticulum | 82.4 | 80.73 |
| CDY28774 | Canola | endoplasmic reticulum, plasma membrane | 80.75 | 79.11 |
| VIT_19s0014g03510.t01 | Wine grape | cytosol | 60.25 | 60.88 |
| KRH22157 | Soybean | cytosol | 59.21 | 59.46 |
| Solyc07g063550.2.1 | Tomato | cytosol | 57.97 | 58.95 |
| KRH27179 | Soybean | cytosol | 58.59 | 58.47 |
| PGSC0003DMT400049649 | Potato | cytosol | 57.14 | 58.11 |
| KRH26038 | Soybean | cytosol | 58.59 | 56.6 |
| PGSC0003DMT400064425 | Potato | cytosol | 50.72 | 52.02 |
| KRH30767 | Soybean | nucleus | 25.67 | 51.03 |
| KRH55419 | Soybean | cytosol | 52.8 | 49.42 |
| Solyc10g006850.2.1 | Tomato | cytosol | 50.93 | 49.2 |
| AT3G17660.2 | Thale cress | nucleus | 22.36 | 43.9 |
| Zm00001d016547_P001 | Maize | cytosol, plastid | 29.4 | 26.69 |
| Zm00001d046873_P001 | Maize | cytosol, plastid | 29.4 | 26.69 |
| Zm00001d051030_P001 | Maize | cytosol, plastid | 29.4 | 26.69 |
| AT5G46750.1 | Thale cress | cytosol | 16.56 | 19.9 |
| AT4G17890.1 | Thale cress | cytosol | 16.36 | 19.13 |
| AT2G37550.1 | Thale cress | mitochondrion | 17.81 | 18.86 |
| AT3G53710.2 | Thale cress | cytosol | 17.81 | 18.74 |
| AT2G35210.1 | Thale cress | cytosol | 14.08 | 17.22 |
| AT5G61980.1 | Thale cress | cytosol | 18.01 | 10.51 |
| AT5G13300.1 | Thale cress | cytosol | 17.6 | 10.28 |
| AT1G10870.2 | Thale cress | cytosol | 15.73 | 9.74 |
| AT1G60860.1 | Thale cress | cytosol | 15.32 | 9.54 |
Protein Annotations
| MapMan:22.3.4.2 | Gene3D:3.30.40.160 | EntrezGene:835519 | ProteinID:AED96483.1 | EMBL:AF184144 | EMBL:AK226402 |
| InterPro:ARFGAP/RecO | ArrayExpress:AT5G54310 | EnsemblPlantsGene:AT5G54310 | RefSeq:AT5G54310 | TAIR:AT5G54310 | RefSeq:AT5G54310-TAIR-G |
| EnsemblPlants:AT5G54310.1 | TAIR:AT5G54310.1 | EMBL:AY088913 | EMBL:AY099716 | InterPro:ArfGAP_dom | InterPro:ArfGAP_dom_sf |
| Unigene:At.20358 | ProteinID:BAB10754.1 | EMBL:BT000287 | UniProt:C4NZX2 | EMBL:FJ794601 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005096 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0005829 |
| GO:GO:0006810 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009838 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0010227 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030136 | GO:GO:0030234 |
| GO:GO:0030276 | GO:GO:0030308 | GO:GO:0035652 | GO:GO:0040007 | GO:GO:0043547 | GO:GO:0046872 |
| GO:GO:0060858 | GO:GO:0090630 | InterPro:IPR001164 | InterPro:IPR038508 | Symbol:NEV | RefSeq:NP_568807.1 |
| PFAM:PF01412 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00405 | PFscan:PS50115 |
| PANTHER:PTHR23180 | PANTHER:PTHR23180:SF160 | UniProt:Q9FL69 | SMART:SM00105 | SUPFAM:SSF57863 | UniParc:UPI00000AC2C7 |
| SEG:seg | : | : | : | : | : |
Description
AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
Coordinates
chr5:-:22056986..22061270
Molecular Weight (calculated)
52595.5 Da
IEP (calculated)
7.993
GRAVY (calculated)
-0.718
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.