Factsheet for PGSC0003DMT400064425

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006850.2.1	Tomato	cytosol	96.18	90.6
PGSC0003DMT400049649	Potato	cytosol	69.21	68.63
VIT_19s0014g03510.t01	Wine grape	cytosol	60.72	59.83
KRH22157	Soybean	cytosol	56.48	55.3
KRH27179	Soybean	cytosol	55.2	53.72
KRH26038	Soybean	cytosol	56.48	53.2
CDY43831	Canola	cytosol	53.29	52.07
CDY52243	Canola	cytosol	52.02	52.02
CDY43044	Canola	cytosol	52.65	51.88
CDY63834	Canola	cytosol	52.02	51.69
Bra022711.1-P	Field mustard	cytosol	51.59	51.48
Bra002995.1-P	Field mustard	cytosol	51.8	51.48
Bra029030.1-P	Field mustard	cytosol	52.23	51.46
AT5G54310.1	Thale cress	cytosol	52.02	50.72
KRH55419	Soybean	cytosol	52.02	47.48
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	23.57	47.23
CDY28774	Canola	endoplasmic reticulum, plasma membrane	49.26	47.06
CDY64205	Canola	endoplasmic reticulum	48.2	46.04
KRH30767	Soybean	nucleus	21.87	42.39
PGSC0003DMT400012918	Potato	cytosol	37.79	38.28
PGSC0003DMT400076862	Potato	cytosol	9.55	34.88
Zm00001d051030_P001	Maize	cytosol, plastid	28.66	25.38
Zm00001d046873_P001	Maize	cytosol, plastid	28.66	25.38
Zm00001d016547_P001	Maize	cytosol, plastid	28.66	25.38
PGSC0003DMT400013119	Potato	cytosol	10.83	24.52
PGSC0003DMT400008126	Potato	cytosol	9.98	21.96
PGSC0003DMT400002955	Potato	cytosol	15.92	18.47
PGSC0003DMT400045159	Potato	cytosol	15.5	17.72
PGSC0003DMT400037443	Potato	cytosol	7.64	17.65
PGSC0003DMT400028571	Potato	mitochondrion	17.2	17.65
PGSC0003DMT400023046	Potato	mitochondrion	16.35	16.49
PGSC0003DMT400068809	Potato	plastid	6.58	14.35
PGSC0003DMT400036762	Potato	cytosol	16.56	13.36
PGSC0003DMT400005756	Potato	cytosol	18.9	10.89
PGSC0003DMT400037441	Potato	cytosol	7.01	9.65

Protein Annotations

EntrezGene:102591862	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	UniProt:M1CCC4	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400025029
PGSC:PGSC0003DMG400025029	EnsemblPlants:PGSC0003DMT400064425	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160
SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI000294EF50	RefSeq:XP_015158726.1	SEG:seg	:

Description

Stromal membrane-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025029]

Coordinates

chr10:-:1764672..1771236

Molecular Weight (calculated)

51120.8 Da

IEP (calculated)

6.851

GRAVY (calculated)

-0.587

Length

471 amino acids

Sequence
(BLAST)

001: MNEKANVTKE LNAKHRKILE GLLKLPENKE CADCKAKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGNE KANSYWEAQV
101: PTNYDRVGIE NFIRAKYEDK RWIPKETEKS ASRIQERRAT GKQQQHSDRS GLEHASNSGG SSVERVSLQR PSTKQDLPAA RFSIPLPPRG PEQVSSGVLP
201: HQTSQTIQPI AVTESAKQVA EVADPPKVET ATDLFDMLSM DSPSDNCASA APVEDNTWTA FQSSQEEEEA KSGVAKSDHR KCQSASAIDD LFKDSSTLSS
301: SVSTSSLSEK LPKDVKNDIM NLFDKSNMVS PFAMHQQQLA QLAQQQSLLM AAAAASGNLK IPGDVQQGPN GSNIVNQSWP HVGYQFPGMM MPASGKTELE
401: KYLQAGVAHS AGNFVPVSTS SVYQMGQNYS GNGTVPSMPS GDAATTLSSS STQSTKEDDF SSLTQGMFSK R

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.