Factsheet for PGSC0003DMT400028571

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
golgi 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084690.1.1	Tomato	mitochondrion	96.95	96.95
PGSC0003DMT400023046	Potato	mitochondrion	75.16	73.88
VIT_08s0007g00010.t01	Wine grape	mitochondrion	66.67	65.81
GSMUA_AchrUn_...	Banana	mitochondrion	58.82	63.68
AT3G53710.2	Thale cress	cytosol	61.87	61.87
GSMUA_Achr7P15230_001	Banana	cytosol	58.39	61.33
KRG95812	Soybean	endoplasmic reticulum	64.49	60.53
AT2G37550.1	Thale cress	mitochondrion	59.7	60.09
KRH67539	Soybean	mitochondrion	63.62	60.08
KRH32302	Soybean	mitochondrion	62.31	59.71
GSMUA_Achr9P04020_001	Banana	mitochondrion	62.31	59.46
KRH19707	Soybean	cytosol	62.31	59.46
Zm00001d007856_P001	Maize	cytosol	35.08	59.19
Zm00001d047793_P001	Maize	extracellular, plasma membrane	58.39	59.16
Os03t0278400-01	Rice	plasma membrane	58.39	59.16
EER92462	Sorghum	mitochondrion	57.95	58.21
Zm00001d028656_P001	Maize	mitochondrion	57.3	57.93
TraesCS4A01G099400.1	Wheat	mitochondrion	58.17	57.3
TraesCS4B01G204900.1	Wheat	mitochondrion	57.73	57.11
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	56.43	56.92
TraesCS4D01G205800.1	Wheat	mitochondrion	57.95	56.84
GSMUA_Achr10P...	Banana	mitochondrion	49.02	56.68
CDY23645	Canola	cytosol	19.17	54.32
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	45.1	52.27
CDY16083	Canola	cytosol	26.8	52.12
Bra026910.1-P	Field mustard	plastid	20.04	50.83
CDY26647	Canola	plastid	20.04	50.83
HORVU4Hr1G059060.2	Barley	mitochondrion	57.95	46.18
PGSC0003DMT400076862	Potato	cytosol	7.19	25.58
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	11.33	22.13
PGSC0003DMT400002955	Potato	cytosol	19.39	21.92
PGSC0003DMT400045159	Potato	cytosol	19.39	21.6
PGSC0003DMT400049649	Potato	cytosol	18.08	17.47
PGSC0003DMT400013119	Potato	cytosol	7.84	17.31
PGSC0003DMT400008126	Potato	cytosol	8.06	17.29
PGSC0003DMT400064425	Potato	cytosol	17.65	17.2
PGSC0003DMT400012918	Potato	cytosol	15.69	15.48
PGSC0003DMT400037443	Potato	cytosol	6.32	14.22
PGSC0003DMT400068809	Potato	plastid	5.66	12.04
PGSC0003DMT400036762	Potato	cytosol	13.51	10.62
PGSC0003DMT400005756	Potato	cytosol	15.9	8.94
PGSC0003DMT400037441	Potato	cytosol	5.45	7.31
Zm00001d032879_P001	Maize	extracellular	0.87	1.84

Protein Annotations

EntrezGene:102595696	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	UniProt:M1ARB5	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG401011001
PGSC:PGSC0003DMG401011001	EnsemblPlants:PGSC0003DMT400028571	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35
SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI000294F642	RefSeq:XP_006339030.1	SEG:seg	:

Description

Arf gtpase-activating protein [Source:PGSC_GENE;Acc:PGSC0003DMG401011001]

Coordinates

chr10:-:54453973..54458377

Molecular Weight (calculated)

49412.2 Da

IEP (calculated)

6.688

GRAVY (calculated)

-0.926

Length

459 amino acids

Sequence
(BLAST)

001: MAASRRLRDL QAQTGNKVCV DCSQKNPQWA SVSYGVFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQLR KMELGGNDKL NKFMNQYGIP KETDIVTKYN
101: TKSASVYRDR IQNLAEGKPW QDPPVVKESV KGPNSSSSRP PLSGSRIGNS GGSSGWDNWD SFDEGGDSNS NMRRNQTVGD FRSGGGSGGG PARSRSTDDV
201: TMAQYEESAA NKDNFFSRKM AENDSRPEGL PPSQGGKYVG FGSSSGSMPR NNNNNSQGDV FSAVTQGFGR LSMIAASAAQ SAATVVQAGT KEFGSKVAEG
301: GYDYKMNETV NVVATKTTEI GQKGWGIMKG VLALASQKVE EFAEGPNPRD DSWQQSENER NSHYKESSQA SKGWNSSGGA QSSGRQANSV SSASWDDWDS
401: KDNRKENPTG GATSSNDDGW AGWDDGKDDG FDNFQSAPNN KHVAHGGKSE SKWTDGGFL

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.