Factsheet for VIT_08s0007g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G53710.2	Thale cress	cytosol	67.1	67.97
PGSC0003DMT400023046	Potato	mitochondrion	68.17	67.88
Solyc10g084690.1.1	Tomato	mitochondrion	66.88	67.76
Solyc09g010520.2.1	Tomato	nucleus	67.96	67.67
KRH67539	Soybean	mitochondrion	69.68	66.67
KRG95812	Soybean	endoplasmic reticulum	70.11	66.67
PGSC0003DMT400028571	Potato	mitochondrion	65.81	66.67
KRH19707	Soybean	cytosol	68.82	66.53
AT2G37550.1	Thale cress	mitochondrion	64.73	66.01
KRH32302	Soybean	mitochondrion	67.53	65.55
VIT_00s0250g00050.t01	Wine grape	plastid	45.81	49.65
VIT_02s0012g01330.t01	Wine grape	cytosol	20.86	23.95
VIT_17s0053g00430.t01	Wine grape	cytosol	12.26	22.09
VIT_19s0014g03510.t01	Wine grape	cytosol	19.78	19.25
VIT_00s0404g00040.t01	Wine grape	cytosol	17.85	16.37
VIT_01s0150g00030.t01	Wine grape	cytosol	13.98	7.81
VIT_17s0000g00310.t01	Wine grape	cytosol	13.12	7.38
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	7.96	5.17

Protein Annotations

EntrezGene:100251169	wikigene:100251169	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	ProteinID:CCB55611	ProteinID:CCB55611.1	UniProt:F6HLG9	EMBL:FN595991	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	EntrezGene:LOC100251169	wikigene:LOC100251169	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105	SUPFAM:SSF57863	TIGR:TC65659
TIGR:TC69184	UniParc:UPI00015C9DAA	ArrayExpress:VIT_08s0007g00010	EnsemblPlantsGene:VIT_08s0007g00010	EnsemblPlants:VIT_08s0007g00010.t01	unigene:Vvi.7147
RefSeq:XP_002262606	RefSeq:XP_002262606.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:14388249..14398305

Molecular Weight (calculated)

50494.0 Da

IEP (calculated)

7.943

GRAVY (calculated)

-0.904

Length

465 amino acids

Sequence
(BLAST)

001: MAASRRLRDL QSQPANKICV DCSQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQVK KMESGGNERL NSFLAQYGIK KETDIVTKYN
101: TKAASIYRDR IQALAEGRPW RDPPVVKETI GAGKSKPPLG QSAGNGGRDG GFGDNGGWDS WDNDDGFRST DMRRNQSTGD VRGGSGSGGR GFPARSRSTE
201: DMYTRTELEA SAANKGDFFA RKLAENESRP EGIPPSQGGK YVGFGSTPPP PQMNAQGDVL KDTVSVVSQG LGRLTLVATS AAQSAANAVQ AGTKELSSKV
301: RDGGYDYKVN ETVNVVTTKT TEIGHKTWGI MKGVMAMASQ KVEEYAKDGM KWNSDGWQRN DNEKNGFYQE FGQQSKGWNS SSEGGQPSSG GHVNSVSSSS
401: WDDWDQKDNK KEDSTKGASH NGDNWAGWDD AKDDGYENFY QSASDKKAVG RNGKSDTMWT EGGFL

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.