Factsheet for Solyc09g010520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023046	Potato	mitochondrion	98.29	98.29
Solyc10g084690.1.1	Tomato	mitochondrion	73.88	75.16
VIT_08s0007g00010.t01	Wine grape	mitochondrion	67.67	67.96
AT3G53710.2	Thale cress	cytosol	63.38	64.49
GSMUA_AchrUn_...	Banana	mitochondrion	58.24	64.15
KRH32302	Soybean	mitochondrion	65.1	63.47
KRH19707	Soybean	cytosol	65.1	63.2
AT2G37550.1	Thale cress	mitochondrion	60.81	62.28
KRG95812	Soybean	endoplasmic reticulum	65.1	62.17
KRH67539	Soybean	mitochondrion	64.45	61.93
Zm00001d007856_P001	Maize	cytosol	35.97	61.76
Zm00001d047793_P001	Maize	extracellular, plasma membrane	59.1	60.93
GSMUA_Achr7P15230_001	Banana	cytosol	56.75	60.64
Os03t0278400-01	Rice	plasma membrane	58.46	60.26
GSMUA_Achr9P04020_001	Banana	mitochondrion	61.67	59.88
Zm00001d028656_P001	Maize	mitochondrion	58.03	59.69
EER92462	Sorghum	mitochondrion	58.24	59.52
TraesCS4A01G099400.1	Wheat	mitochondrion	58.24	58.37
TraesCS4B01G204900.1	Wheat	mitochondrion	57.82	58.19
TraesCS4D01G205800.1	Wheat	mitochondrion	58.24	58.12
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	55.25	56.7
CDY23645	Canola	cytosol	19.27	55.56
GSMUA_Achr10P...	Banana	mitochondrion	46.25	54.41
CDY16083	Canola	cytosol	27.41	54.24
Bra026910.1-P	Field mustard	plastid	20.56	53.04
CDY26647	Canola	plastid	20.56	53.04
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	44.75	52.78
HORVU4Hr1G059060.2	Barley	mitochondrion	58.24	47.22
Solyc03g098500.2.1	Tomato	nucleus	11.99	22.58
Solyc08g076920.2.1	Tomato	nucleus	19.49	22.09
Solyc08g005070.2.1	Tomato	cytosol	18.63	21.64
Solyc07g063550.2.1	Tomato	cytosol	17.56	17.26
Solyc10g006850.2.1	Tomato	cytosol	16.7	15.6
Solyc03g006610.2.1	Tomato	cytosol	15.42	15.45
Solyc12g042170.1.1	Tomato	cytosol	13.49	11.62
Solyc05g023750.2.1	Tomato	cytosol	15.42	8.81
Solyc04g008660.2.1	Tomato	cytosol	13.28	7.94
Solyc03g118260.1.1	Tomato	cytosol	13.49	7.88
Zm00001d032879_P001	Maize	extracellular	0.86	1.84
Solyc12g042180.1.1	Tomato	cytosol	0.21	0.45

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:K4CR79	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc09g010520.2	EnsemblPlants:Solyc09g010520.2.1
UniParc:UPI000276AD14	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:3897831..3901988

Molecular Weight (calculated)

50442.7 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.863

Length

467 amino acids

Sequence
(BLAST)

001: MAASRRLRDL QAQPGNKICV DCSQKNPQWA SVSYGVFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIR KMELGGNESF NKFVLQYGIP KETDIVTKYN
101: TKAATVYRDR IQSLAEGKPW RDPPVVKEVL RGSASNNGSR PPLSSGASGG GSRNGGWDSW DNNDDGGFSG SNTKDIRRNQ TVGDFRSGGS SGGAPARSRS
201: TADISKEQYE ASAANKDSFF ARKMAENESR PDGLPPSQGG KYVGFGSNPA PMPRNNMNQQ GDVFSAVTQG FGRLSMIAAT AAQSAASVVQ VGTKELTSKV
301: KEGGYDTKVN ETVNVVTAKT SEIGQKSWGI MKGVLAMASQ KVEEYTKESP AWKNDSWQRG ESEKNGYYQD FNQDPKGWNA SGGAQSSGRN VNSVSSGSWD
401: DWDNEDKSKV NPPKAAAAPN NKNDDWAGWD DGQDDGFDNH YQSASNNNHA AVHAGKSDSK WTDGGFL

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.