Factsheet for Solyc03g098500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	92.74	97.87
KRH15700	Soybean	cytosol	37.9	48.45
CDX92147	Canola	cytosol	41.53	40.55
KRH38902	Soybean	cytosol	39.52	40.33
AT3G17660.2	Thale cress	nucleus	39.52	39.84
CDX95838	Canola	cytosol	40.73	39.76
KRH09434	Soybean	cytosol	38.71	39.34
VIT_17s0053g00430.t01	Wine grape	cytosol	40.32	38.76
Bra021263.1-P	Field mustard	cytosol	39.52	35.77
KRH41906	Soybean	cytosol	40.32	33.44
Solyc07g063550.2.1	Tomato	cytosol	46.37	24.21
Solyc10g006850.2.1	Tomato	cytosol	45.16	22.4
Solyc03g006610.2.1	Tomato	cytosol	40.73	21.67
Solyc08g005070.2.1	Tomato	cytosol	20.97	12.94
Solyc08g076920.2.1	Tomato	nucleus	20.16	12.14
Solyc09g010520.2.1	Tomato	nucleus	22.58	11.99
Solyc10g084690.1.1	Tomato	mitochondrion	22.18	11.98
Solyc12g042170.1.1	Tomato	cytosol	25.4	11.62
Solyc04g008660.2.1	Tomato	cytosol	27.02	8.58
Solyc05g023750.2.1	Tomato	cytosol	26.61	8.08
Solyc03g118260.1.1	Tomato	cytosol	25.81	8.0
Solyc12g042180.1.1	Tomato	cytosol	1.61	1.79

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:K4BJR5	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc03g098500.2	EnsemblPlants:Solyc03g098500.2.1
UniParc:UPI000276894C	:	:	:	:	:

Description

Probable ADP-ribosylation factor GTPase-activating protein AGD15 [Source:Projected from Arabidopsis thaliana (AT3G17660) UniProtKB/Swiss-Prot;Acc:Q0WQQ1]

Coordinates

chr3:-:60784699..60787315

Molecular Weight (calculated)

28045.0 Da

IEP (calculated)

7.887

GRAVY (calculated)

-0.752

Length

248 amino acids

Sequence
(BLAST)

001: MNDKASVSKE LNAKHAKILE GLLKLPENRE CADCRGRAPR WASINLGIFI CLQCSGHHRS LGVHISKVRS TTLDTWLPEQ ISFMQCVGNE KSNNYWEADL
101: SASVDRSDIG KFIQTKYQDK KWASKYNPQP GQSDMIGETS DFGGKADVPR KARKYSLEED VFSTQPPQVP TTTRSRGVSL DTMDEFLNLP PKNGLMSAPS
201: VKHKEDTQDL FSLLYAPEGN QDRTIVPPSR WATFESDETK RRTSWELY

Best Arabidopsis Sequence Match ( AT3G17660.1 )
(BLAST)

001: MNRKASVSKE LNAKHSKILE ALLKHPDNRE CADCRSKAPR WASVNLGIFI CMQCSGIHRS LGVHISQVRS ITLDTWLPDQ VAFMKSTGNA KGNEYWESEL
101: PQHFERSSSD TFIRAKYSEK RWVSPGAIQP APIVSQLSCK VSHLVESGYK PETPKKARTL SLDEEILLHH VLQVTPPETR TRAGSVDMKE NVYVVPLPEF
201: KKPNQKNENF SSEVNQNRRT TIAPPSSWAT FD

Arabidopsis Description

AGD15ARF-GAP domain 15 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR18]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.