Factsheet for Solyc08g076920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045159	Potato	cytosol	97.33	97.33
Solyc08g005070.2.1	Tomato	cytosol	78.88	80.85
VIT_02s0012g01330.t01	Wine grape	cytosol	72.57	73.83
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	70.39	71.96
KRH75607	Soybean	cytosol	69.66	71.22
AT5G46750.1	Thale cress	cytosol	66.02	67.66
CDX90439	Canola	cytosol	66.99	67.32
Bra013265.1-P	Field mustard	cytosol	64.08	67.01
CDY44506	Canola	cytosol	64.08	66.67
CDY01499	Canola	cytosol	65.78	66.58
CDX78809	Canola	cytosol	63.11	66.5
CDX77687	Canola	cytosol	64.81	66.42
GSMUA_Achr11P...	Banana	cytosol	64.81	66.42
CDY58500	Canola	cytosol	64.56	66.33
Bra024999.1-P	Field mustard	cytosol	58.5	66.03
AT4G17890.1	Thale cress	cytosol	65.53	65.38
GSMUA_Achr4P28870_001	Banana	cytosol	63.59	64.85
GSMUA_Achr2P18150_001	Banana	cytosol	63.35	64.6
AT2G35210.1	Thale cress	cytosol	61.89	64.56
GSMUA_Achr4P21720_001	Banana	cytosol	63.35	64.29
EER91883	Sorghum	cytosol	63.35	64.13
EER90493	Sorghum	cytosol	64.32	63.7
Os10t0574800-01	Rice	plasma membrane	62.86	63.64
CDY59045	Canola	cytosol	60.19	63.1
TraesCS1A01G193000.1	Wheat	cytosol	61.89	62.96
Zm00001d012827_P002	Maize	cytosol	64.32	62.95
Os03t0854100-01	Rice	cytosol	62.86	62.86
TraesCS1D01G196700.1	Wheat	cytosol	61.65	62.72
Zm00001d034885_P002	Maize	cytosol	63.11	62.5
Bra017330.1-P	Field mustard	cytosol	59.71	62.44
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	62.38	62.08
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	61.89	61.59
Zm00001d047020_P002	Maize	cytosol	63.59	59.55
TraesCS5B01G554600.1	Wheat	cytosol, plastid	61.89	55.19
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	61.89	54.14
Zm00001d030031_P002	Maize	plastid	62.62	53.42
HORVU5Hr1G123590.1	Barley	cytosol	61.89	52.36
HORVU1Hr1G047800.23	Barley	plastid	22.33	27.22
Bra012634.1-P	Field mustard	cytosol	66.75	26.88
Solyc03g098500.2.1	Tomato	nucleus	12.14	20.16
Solyc09g010520.2.1	Tomato	nucleus	22.09	19.49
Solyc10g084690.1.1	Tomato	mitochondrion	21.12	18.95
Solyc07g063550.2.1	Tomato	cytosol	19.66	17.05
Solyc10g006850.2.1	Tomato	cytosol	18.69	15.4
Solyc03g006610.2.1	Tomato	cytosol	15.29	13.52
Solyc12g042170.1.1	Tomato	cytosol	13.11	9.96
Solyc05g023750.2.1	Tomato	cytosol	15.53	7.83
Solyc04g008660.2.1	Tomato	cytosol	14.32	7.55
Solyc03g118260.1.1	Tomato	cytosol	14.08	7.25
Solyc12g042180.1.1	Tomato	cytosol	0.49	0.89

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:K4CN52	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	SMART:SM00105	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc08g076920.2	EnsemblPlants:Solyc08g076920.2.1
UniParc:UPI000276C0B9	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:60837389..60843953

Molecular Weight (calculated)

44249.6 Da

IEP (calculated)

9.347

GRAVY (calculated)

-0.523

Length

412 amino acids

Sequence
(BLAST)

001: MASENFSDKN AVFRKLKSKP ENKMCFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SPEQLKMMYF GGNNRAQVFF KQHGWNDGGK
101: TDSKYTSRAA DLYRQLLSKE VAKSTAEEAA LQAALPAALP ASPVASQAAQ ATNVFPDIKT SEPPKETSSL KDEKTEVIAS PKASQAVTTF LKKPTVAKKA
201: GKSGGLGARK LTKKSSESLY EQKPEEPPVQ VPSSNAASNA PTVGSSFASR FEYTDNVQPT ETSSGGSRVL NHVAPPKSTS FFSDYGMDSG FTKKTSSNSS
301: KAQIEETDEA RKKFTNAKSI SSAQFFGDQS KAAMEASVSL QKYSGSSAIS SADLFGQDDG AAYEISAGDL INRISFQAQQ DMSSIKNIAG ETGKKLSSLA
401: SNLISDLQDR IL

Best Arabidopsis Sequence Match ( AT5G46750.1 )
(BLAST)

001: MATENLTDKN VVFRKLKSKS ENKVCFDCSA KNPTWASVPY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SPEQLRTMMF GGNNRAQVFF KQHGWNDGGK
101: IEAKYTSRAA DMYRQTLAKE VAKAMAEETV LPSLSSVATS QPVESSENGF TSESPKESSL KQEAAVVSSP KASQKVVAST FKKPLVSRKS GKTGGLGARK
201: LTTKSKDNLY EQKPEEPVPV IPAASPTNDT SAAGSSFASR FEYFDDEQSG GQSGTRVLSH VAPPKSSNFF NEFGMDSAFP KKSSSSSSKA QVEETDEARK
301: KFSNAKSISS AQFFGNQNRD ADLDSKATLQ KFSGSAAISS SDLFGHGPDD SNIDITASDL INRISFQAQQ DMSSIANLAE ETKNKLGTFA SSIFSDLQDR
401: ML

Arabidopsis Description

AGD9AGD9 [Source:UniProtKB/TrEMBL;Acc:A0A178UAW4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.