Factsheet for TraesCS1D01G196700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G193000.1	Wheat	cytosol	99.01	99.01
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	98.52	84.71
Os10t0574800-01	Rice	plasma membrane	83.21	82.8
EER91883	Sorghum	cytosol	83.21	82.8
Zm00001d047020_P002	Maize	cytosol	82.47	75.91
Zm00001d030031_P002	Maize	plastid	82.47	69.15
VIT_02s0012g01330.t01	Wine grape	cytosol	66.42	66.42
GSMUA_Achr4P28870_001	Banana	cytosol	65.68	65.84
GSMUA_Achr2P18150_001	Banana	cytosol	65.68	65.84
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	64.94	65.26
KRH75607	Soybean	cytosol	64.44	64.76
GSMUA_Achr11P...	Banana	cytosol	64.2	64.68
GSMUA_Achr4P21720_001	Banana	cytosol	64.69	64.53
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	65.19	63.77
Solyc08g005070.2.1	Tomato	cytosol	63.21	63.68
PGSC0003DMT400002955	Potato	cytosol	62.22	62.07
Solyc08g076920.2.1	Tomato	nucleus	62.72	61.65
CDX78809	Canola	cytosol	59.26	61.38
CDY44506	Canola	cytosol	60.0	61.36
Bra013265.1-P	Field mustard	cytosol	59.51	61.17
PGSC0003DMT400045159	Potato	cytosol	62.22	61.16
CDX77687	Canola	cytosol	60.25	60.7
CDY58500	Canola	cytosol	60.0	60.6
CDY01499	Canola	cytosol	60.74	60.44
CDX90439	Canola	cytosol	60.99	60.24
Bra024999.1-P	Field mustard	cytosol	54.07	60.0
AT5G46750.1	Thale cress	cytosol	58.77	59.2
AT4G17890.1	Thale cress	cytosol	60.25	59.08
AT2G35210.1	Thale cress	cytosol	56.54	57.97
CDY59045	Canola	cytosol	54.57	56.23
Bra017330.1-P	Field mustard	cytosol	54.32	55.84
Bra012634.1-P	Field mustard	cytosol	60.49	23.95
TraesCS4D01G205800.1	Wheat	mitochondrion	21.23	18.38
TraesCS2D01G212100.1	Wheat	cytosol	19.01	16.21
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	16.79	8.03
TraesCS5D01G300300.2	Wheat	cytosol	15.31	7.38
TraesCS6D01G213800.1	Wheat	cytosol	11.6	6.16

Protein Annotations

EnsemblPlants:TraesCS1D01G196700.1	EnsemblPlantsGene:TraesCS1D01G196700	Gene3D:3.30.40.160	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150
GO:GO:0030234	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:IPR001164	InterPro:IPR038508
PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	PFAM:PF01412	PFscan:PS50115	PRINTS:PR00405	SEG:seg
SMART:SM00105	SUPFAM:SSF57863	MapMan:22.3.4.2	:	:	:

Description

No Description!

Coordinates

chr1D:-:276531657..276535106

Molecular Weight (calculated)

43554.6 Da

IEP (calculated)

9.392

GRAVY (calculated)

-0.613

Length

405 amino acids

Sequence
(BLAST)

001: MATDAGAADR SSAFRKLRAK SDNKMCFDCN AKNPTWASVT YGVFLCIDCS AVHRSLGVHV SFVRSTNLDS WTPEQLKMMV YGGNNRAQAF FKQHGWTDGG
101: KIEAKYTSRA ADLYRQLLLK EVSKSSTEDG NNSGLPSPVA ASQTSSQAAA FPDFKLVEVP KEVVNEKNEP ESETIRSPKA PTHSFKKPIG GKKPGSKTGG
201: LGARKLTTKP SESLYEQKPE EPAPALPSVA ESTTARSKSH TSRFEYVENV PSAGSSSAEN QAFGHVAPPK SSNFFGEYGM DSGYHKKSTS GASKMQVEES
301: SEARQKFSNA KSISSSQFFG DQANLEKEGQ ISLQKFSGSS AISSADLFGQ QANNSNADLS ASDLINRISF QATQDLTSLK SMAGQTGKKL TSMASNIISD
401: LDRIL

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.