Factsheet for TraesCS1B01G207900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G196700.1	Wheat	cytosol	84.71	98.52
TraesCS1A01G193000.1	Wheat	cytosol	84.71	98.52
EER91883	Sorghum	cytosol	71.76	83.05
Os10t0574800-01	Rice	plasma membrane	71.34	82.56
Zm00001d047020_P002	Maize	cytosol	71.13	76.14
Zm00001d030031_P002	Maize	plastid	74.31	72.46
VIT_02s0012g01330.t01	Wine grape	cytosol	57.32	66.67
GSMUA_Achr2P18150_001	Banana	cytosol	56.9	66.34
GSMUA_Achr4P28870_001	Banana	cytosol	56.69	66.09
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	55.84	65.26
KRH75607	Soybean	cytosol	55.41	64.76
GSMUA_Achr11P...	Banana	cytosol	55.2	64.68
GSMUA_Achr4P21720_001	Banana	cytosol	55.41	64.29
Solyc08g005070.2.1	Tomato	cytosol	54.56	63.93
PGSC0003DMT400002955	Potato	cytosol	53.72	62.32
Solyc08g076920.2.1	Tomato	nucleus	54.14	61.89
CDX78809	Canola	cytosol	51.38	61.89
CDY44506	Canola	cytosol	52.02	61.87
Bra013265.1-P	Field mustard	cytosol	51.59	61.68
PGSC0003DMT400045159	Potato	cytosol	53.72	61.41
CDY58500	Canola	cytosol	52.02	61.1
CDX77687	Canola	cytosol	52.02	60.95
CDY01499	Canola	cytosol	52.44	60.69
Bra024999.1-P	Field mustard	cytosol	46.92	60.55
CDX90439	Canola	cytosol	52.65	60.49
AT5G46750.1	Thale cress	cytosol	50.74	59.45
AT4G17890.1	Thale cress	cytosol	51.59	58.84
AT2G35210.1	Thale cress	cytosol	48.83	58.23
CDY59045	Canola	cytosol	46.92	56.23
TraesCS5B01G554600.1	Wheat	cytosol, plastid	54.99	56.06
Bra017330.1-P	Field mustard	cytosol	46.71	55.84
Bra012634.1-P	Field mustard	cytosol	52.23	24.05
TraesCS4B01G204900.1	Wheat	mitochondrion	18.68	18.97
TraesCS2B01G230900.1	Wheat	cytosol	16.77	16.63
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	15.07	8.38
TraesCS5B01G292200.1	Wheat	cytosol	14.23	8.03
TraesCS6B01G259800.1	Wheat	cytosol	11.04	6.78

Protein Annotations

EnsemblPlants:TraesCS1B01G207900.1	EnsemblPlantsGene:TraesCS1B01G207900	Gene3D:3.30.40.160	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150
GO:GO:0030234	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:IPR001164	InterPro:IPR038508
PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	PFAM:PF01412	PFscan:PS50115	PRINTS:PR00405	SEG:seg
SMART:SM00105	SUPFAM:SSF57863	MapMan:22.3.4.2	:	:	:

Description

No Description!

Coordinates

chr1B:-:375817851..375821572

Molecular Weight (calculated)

50667.5 Da

IEP (calculated)

9.890

GRAVY (calculated)

-0.493

Length

471 amino acids

Sequence
(BLAST)

001: MKGTRGGGVR SRKAQHHFLA SPRSGRVCVC VCVASPPLSY FLLPSPSLLL LLNSEEARAR ARSGWWLAAM ATDAGAADRS SVFRKLRAKS DNKMCFDCNA
101: KNPTWASVTY GVFLCIDCSA VHRSLGVHVS FVRSTNLDSW TPEQLKMMVY GGNNRAQAFF KQHGWTDGGK IEAKYTSRAA DLYRQLLLKE VSKSSTEDGN
201: NSGPPSPVAA SQTSSQAAAF PDFKLVEVPK EVVNEPESEI IRSPKAPTHS FKKPIGGKKP GSKTGGLGAR KLTTKPSESL YEQKPEEPAP ALPSVAESTT
301: ARSKSHTSRF EYVENVPSAG SSSAENQAFG HVAPPKSSNF FGEYGMDSGY HKKSTSGASK MQVEESSEAR QKFSNAKSIS SSQFFGDQAN LEKEGQISLQ
401: KFSGSSAISS ADLFGQQANN SNADLSASDL INRISFQATQ DLTSLKSMAG QTGKKLTSMA SNIISDLDRI L

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.