Factsheet for TraesCS5B01G554600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	87.66	97.83
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	87.45	97.58
Os03t0854100-01	Rice	cytosol	74.03	83.01
HORVU5Hr1G123590.1	Barley	cytosol	86.15	81.72
EER90493	Sorghum	cytosol	70.13	77.88
Zm00001d012827_P002	Maize	cytosol	70.13	76.96
Zm00001d034885_P002	Maize	cytosol	69.05	76.68
GSMUA_Achr4P28870_001	Banana	cytosol	57.79	66.09
GSMUA_Achr4P21720_001	Banana	cytosol	58.01	66.01
VIT_02s0012g01330.t01	Wine grape	cytosol	57.36	65.43
GSMUA_Achr11P...	Banana	cytosol	56.49	64.93
Solyc08g005070.2.1	Tomato	cytosol	55.84	64.18
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	55.41	63.52
KRH75607	Soybean	cytosol	55.19	63.28
GSMUA_Achr2P18150_001	Banana	cytosol	55.19	63.12
PGSC0003DMT400002955	Potato	cytosol	54.98	62.56
Solyc08g076920.2.1	Tomato	nucleus	55.19	61.89
PGSC0003DMT400045159	Potato	cytosol	54.33	60.92
Bra024999.1-P	Field mustard	cytosol	46.97	59.45
CDY58500	Canola	cytosol	50.87	58.6
AT2G35210.1	Thale cress	cytosol	50.0	58.48
CDY59045	Canola	cytosol	49.57	58.27
AT5G46750.1	Thale cress	cytosol	50.65	58.21
CDX77687	Canola	cytosol	50.43	57.96
Bra017330.1-P	Field mustard	cytosol	49.35	57.87
CDY44506	Canola	cytosol	49.13	57.32
CDX90439	Canola	cytosol	50.65	57.07
Bra013265.1-P	Field mustard	cytosol	48.48	56.85
CDX78809	Canola	cytosol	47.84	56.52
CDY01499	Canola	cytosol	49.57	56.27
AT4G17890.1	Thale cress	cytosol	50.0	55.93
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	56.06	54.99
Bra012634.1-P	Field mustard	cytosol	50.22	22.68
TraesCS4B01G204900.1	Wheat	mitochondrion	18.61	18.53
TraesCS2B01G230900.1	Wheat	cytosol	16.45	16.0
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	13.64	7.44
TraesCS5B01G292200.1	Wheat	cytosol	12.12	6.71
TraesCS6B01G259800.1	Wheat	cytosol	9.96	6.0

Protein Annotations

EnsemblPlants:TraesCS5B01G554600.1	EnsemblPlantsGene:TraesCS5B01G554600	Gene3D:3.30.40.160	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150
GO:GO:0030234	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:IPR001164	InterPro:IPR038508
PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	PFAM:PF01412	PFscan:PS50115	PRINTS:PR00405	SEG:seg
SMART:SM00105	SUPFAM:SSF57863	MapMan:22.3.4.2	:	:	:

Description

No Description!

Coordinates

chr5B:-:704239776..704243264

Molecular Weight (calculated)

50818.3 Da

IEP (calculated)

9.594

GRAVY (calculated)

-0.667

Length

462 amino acids

Sequence
(BLAST)

001: MAFDAFTDKT AVFRRLKAKP ENKVYLLFFL SPPSSSPRTR LPTYRLAQPD LPPPQYRSDR YVLAFYEWLW QMCFDCNAKN PTWASVTYGI FLCLDCSAFH
101: RSLGVHITFV RSTNLDSWTP DQLKMMAFGG NNRAHAFFKQ HGWSEGSGKV DSKYTSRAAE LYRQILQKEV AKSSAVNVLP SSPVAASRPP NPTDDFPDFK
201: LADAPEENTN GKHEPAVANP PKEPAQAPKA PTHPTYVSSV KKPLGAKKLG AKTGGLGVKK LTTKSNESLY DQKPEEPKPA LPTMTTTTSA AKSGPSSHSR
301: FQYVENETST ESKTGGGNKT GHVSAPKTSD FFHEYGMDNG FQRKTSTAAS KTQIEETDEA RKKFSNAKAI SSSQYFGNTD REQKEAQLSL QKFSGSSSIS
401: SADLFGRDTN DSDLDASAAD LINRISFQAS QDLSSLKNMA GETGKKLTSF ASNFITDLDR IL

Best Arabidopsis Sequence Match ( AT2G35210.1 )
(BLAST)

001: MASENLNDKI SVFKKLKAKS DNKICFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SSEQLKMMIY GGNNRAQVFF KQYGWSDGGK
101: TEAKYTSRAA DLYKQILAKE VAKSKAEEEL DLPPSPPDST QVPNGLSSIK TSEALKESNT LKQQEKPDVV PVSPRISRSV KKPLGAKKTG KTGGLGARKL
201: TTKSSGTLYD QKPEESVIIQ ATSPVSAKSA RSSFSSRFDY ADNVQNREDY MSPQVVSHVA PPKSSGFFEE ELEMNGGRFQ KKPITSSSKL QIQETDEARK
301: KFTNAKSISS AQYFGNDNNS ADLEAKSSLK KFSGSSAISS ADLFGDGDGD FPLDLTAGDL LNRLSLQAQQ DISSLKNMAE ETKKKLGSVA SSLWV

Arabidopsis Description

AGD10RPA [Source:UniProtKB/TrEMBL;Acc:A0A178VQN0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.