Factsheet for TraesCS7B01G161800.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G385400.2
TraesCS1B01G411700.3
TraesCS1D01G393000.2
TraesCS4A01G435000.1
TraesCS5A01G056700.2
TraesCS5A01G293000.1
TraesCS5A01G377600.1
TraesCS5B01G060100.2
TraesCS5B01G292200.1
TraesCS5B01G381200.1
TraesCS5D01G067900.2
TraesCS5D01G300300.2
TraesCS5D01G387600.1
TraesCS6B01G443600.1
TraesCS6D01G385300.1
TraesCS7A01G049200.1
TraesCS7A01G263800.2
TraesCS7B01G161800.1
TraesCS7D01G044300.1
TraesCS7D01G264700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	TraesCS5A01G056700.2	AT3G63300.1	19363154
AT5G13300.1	TraesCS5A01G377600.1	AT3G63300.1	19363154
AT5G13300.1	TraesCS5B01G060100.2	AT3G63300.1	19363154
AT5G13300.1	TraesCS5B01G381200.1	AT3G63300.1	19363154
AT5G13300.1	TraesCS5D01G067900.2	AT3G63300.1	19363154
AT5G13300.1	TraesCS5D01G387600.1	AT3G63300.1	19363154
AT5G13300.1	TraesCS5A01G293000.1	AT5G13300.1	15743878
AT5G13300.1	TraesCS5B01G292200.1	AT5G13300.1	15743878
AT5G13300.1	TraesCS5D01G300300.2	AT5G13300.1	15743878
AT5G13300.1	TraesCS7A01G263800.2	AT5G13300.1	15743878
AT5G13300.1	TraesCS7B01G161800.1	AT5G13300.1	15743878
AT5G13300.1	TraesCS7D01G264700.1	AT5G13300.1	15743878
AT5G13300.1	TraesCS4A01G435000.1	AT5G26980.1	15743878
AT5G13300.1	TraesCS7A01G049200.1	AT5G26980.1	15743878
AT5G13300.1	TraesCS7D01G044300.1	AT5G26980.1	15743878
AT5G13300.1	TraesCS1A01G385400.2	AT5G42080.1	15923323
AT5G13300.1	TraesCS1B01G411700.3	AT5G42080.1	15923323
AT5G13300.1	TraesCS1D01G393000.2	AT5G42080.1	15923323
AT5G13300.1	TraesCS6B01G443600.1	AT5G42080.1	15923323
AT5G13300.1	TraesCS6D01G385300.1	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	100.0	100.0
TraesCS7A01G263800.2	Wheat	cytosol	95.16	97.93
HORVU7Hr1G055220.21	Barley	cytosol	94.1	95.91
Zm00001d049872_P001	Maize	cytosol	54.78	84.52
OQU80812	Sorghum	cytosol	80.28	82.52
Zm00001d031667_P006	Maize	cytosol	79.46	81.77
Os08t0537600-01	Rice	plasma membrane	78.75	80.26
Zm00001d009353_P001	Maize	cytosol	11.33	79.34
Zm00001d015981_P001	Maize	peroxisome	14.17	78.43
TraesCS5B01G292200.1	Wheat	cytosol	73.44	74.58
CDX70496	Canola	cytosol	47.93	73.42
GSMUA_Achr11P...	Banana	cytosol	69.54	72.18
Solyc12g042180.1.1	Tomato	cytosol	18.89	71.43
Zm00001d049871_P001	Maize	cytosol	16.06	71.2
Zm00001d004245_P003	Maize	cytosol	16.06	70.83
GSMUA_Achr4P00060_001	Banana	cytosol	68.71	69.53
CDY09784	Canola	cytosol	62.69	66.54
VIT_01s0150g00030.t01	Wine grape	cytosol	65.29	66.47
KRH45201	Soybean	cytosol	64.58	66.46
PGSC0003DMT400005756	Potato	cytosol	63.99	66.34
Solyc05g023750.2.1	Tomato	cytosol	63.52	65.85
Bra006193.1-P	Field mustard	cytosol	62.69	65.31
AT5G13300.1	Thale cress	cytosol	63.64	65.18
CDX69650	Canola	cytosol	63.28	64.89
Bra008838.1-P	Field mustard	cytosol	63.05	64.65
CDX78515	Canola	cytosol	63.28	64.5
KRH01512	Soybean	cytosol	63.87	64.48
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	54.9	62.84
AT5G61980.1	Thale cress	cytosol	58.44	59.78
Solyc03g118260.1.1	Tomato	cytosol	56.43	59.75
VIT_17s0000g00310.t01	Wine grape	cytosol	58.21	59.61
Bra010046.1-P	Field mustard	cytosol	55.14	59.04
CDY00242	Canola	cytosol	54.31	58.45
Bra029295.1-P	Field mustard	cytosol	58.68	57.66
CDY30689	Canola	cytosol	58.56	57.54
KRH63858	Soybean	cytosol	52.89	57.07
CDX86943	Canola	cytosol	46.87	55.76
KRH59741	Soybean	cytosol	52.66	55.75
PGSC0003DMT400036762	Potato	cytosol	37.78	54.79
Zm00001d015278_P001	Maize	mitochondrion	21.72	54.76
Solyc12g042170.1.1	Tomato	cytosol	34.71	54.24
KRH54108	Soybean	cytosol	45.34	52.03
TraesCS6B01G259800.1	Wheat	cytosol	42.62	47.07
CDY53619	Canola	cytosol	17.36	43.62
Zm00001d023982_P001	Maize	cytosol	19.01	41.39
TraesCS2B01G230900.1	Wheat	cytosol	10.27	18.32
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	8.38	15.07
TraesCS5B01G554600.1	Wheat	cytosol, plastid	7.44	13.64
TraesCS4B01G204900.1	Wheat	mitochondrion	7.44	13.58
CDY08879	Canola	cytosol	2.6	6.98

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:BAR_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234
InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267
InterPro:IPR036770	InterPro:IPR038508	PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746
InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297
PANTHER:PTHR23180	PANTHER:PTHR23180:SF242	SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721
SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	EnsemblPlantsGene:TraesCS7B01G161800	EnsemblPlants:TraesCS7B01G161800.1
TIGR:cd00204	TIGR:cd07606	TIGR:cd13250	SEG:seg	:	:

Description

No Description!

Coordinates

chr7B:-:221971139..221979987

Molecular Weight (calculated)

95376.0 Da

IEP (calculated)

7.744

GRAVY (calculated)

-0.463

Length

847 amino acids

Sequence
(BLAST)

001: MRGHVLRIIS WSAWVLDIVL MLSGKQIYFI ARKFGLDYQI QSLEESAEVL RERCLKFHKG CRKYTEGLGE AYDGDIAFAS ALETFGGGHN DPISVAFGGP
101: VMNKFTIALR EIGTYKEVLR SQVEHMLNDR LLNFVDVDLH DVKDARKRFD KASLVYDQIR EKYLSLKKGT RADITTAIEE ELHSARSSFE QARFNLVTAI
201: SHIEAKKRFE FLEAVSATMD SHLRYFKQGY ELLHQMEPYI NQVLAYSQQS RERANKEQAS LLERMHEYKK QIERDSRSSG NGLNDSPNVD GIQTIGRSSH
301: KMIEAVMQSS TKGKVQTIRQ GYLSKRSSNL RGDWKRRFFV LDSRGMLYYY RKQINRPAGV SQVQRTNNTP EHGSGLLSRL FSSHYHGIHD EKSVARHTVN
401: LLTSTIKVDA EQSDLRFCFR IISPMKIYTL QAESALDQMD WIEKITGVIA SLLNAQSPEQ CLHSPRSCGH DRSASESSSY TSSVELETST SEDLTLEKNA
501: GNGQHHHRTH IKPEKPIDLL RRVDGNTICA DCGAAEPDWA SLNLGALLCI ECSGVHRNLG VHISKVRSLT LDVRVWEPSV INLFQSLGNM FVNRVWEETL
601: PSSNNGSSVD NTSTNGSQAA QYLTTSKPKH SDPFSAKEKF IHAKYADKEF VRRHSIDEIH IAQQMWDSVT ANDKKGVYSL IVASHANVNL VYGQMASGLL
701: LNLGKALIQE QPTSPADGSP RFFDCNSHEK VSPRESLSPP STSSHVDELD DRYEGFSLLH LACRVADVGM VELLLQYGAS VNVSDSRGRM PLHHCILKGR
801: HLHAKLLLSR GADTHAIDRD GRSALQYAMD RSTSDEGMLA LLEEHFR

Best Arabidopsis Sequence Match ( AT1G10870.1 )
(BLAST)

001: MATFINLEDS PMFQKQVCSL EGTADELKDR CQKLYKGVKK FMGTLGEASK GESAFAACLE EFGGGPDDPI SLSIGGPVIS KFINALRELA SYKEFLCSQV
101: EHVLLERLMN FISVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITKAI GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN ACAECNAPEP DWASLNLGVL
501: LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL GNVYCNSLWE GLLHLDDDCE DGSALSHASV SKPCPEDSFS VKEKYILGKY LEKALVIKDE
601: SEANLSAASR IWEAVQSRNI REIYRLIVTT GDVNIINTKF DDITDIDAYH HIDAAEKAVK KRHDPTVCQR IKESNEPRSC LQGCSLLHVA CHIGDSVLLE
701: LLLQFGADLN IRDYHGRTPL HHCISSGNHK FAKILLRRGA RPSIEDDGGL SVLERAMEMG AITDEELFLL LAECA

Arabidopsis Description

AGD4ARF-GAP domain 4 [Source:TAIR;Acc:AT1G10870]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.