Factsheet for GSMUA_Achr4P00060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P04880_001
GSMUA_Achr4P00060_001
GSMUA_Achr4P18460_001
GSMUA_Achr4P21160_001
GSMUA_Achr4P21170_001
GSMUA_Achr5P02990_001
GSMUA_Achr7P07730_001
GSMUA_Achr7P22530_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	GSMUA_Achr4P21160_001	AT3G63300.1	19363154
AT5G13300.1	GSMUA_Achr4P21170_001	AT3G63300.1	19363154
AT5G13300.1	GSMUA_Achr5P02990_001	AT3G63300.1	19363154
AT5G13300.1	GSMUA_Achr7P07730_001	AT3G63300.1	19363154
AT5G13300.1	GSMUA_AchrUn_...	AT3G63300.1	19363154
AT5G13300.1	GSMUA_Achr11P...	AT5G13300.1	15743878
AT5G13300.1	GSMUA_Achr4P00060_001	AT5G13300.1	15743878
AT5G13300.1	GSMUA_Achr7P22530_001	AT5G13300.1	15743878
AT5G13300.1	GSMUA_Achr10P...	AT5G26980.1	15743878
AT5G13300.1	GSMUA_Achr11P...	AT5G26980.1	15743878
AT5G13300.1	GSMUA_Achr4P18460_001	AT5G26980.1	15743878
AT5G13300.1	GSMUA_Achr1P04880_001	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	86.02	88.24
GSMUA_Achr7P22550_001	Banana	cytosol	13.02	85.83
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	71.92	81.35
CDX70496	Canola	cytosol	52.33	79.2
Zm00001d049872_P001	Maize	cytosol	51.25	78.14
Os09t0510700-01	Rice	cytosol	77.06	77.15
GSMUA_Achr8P00550_001	Banana	cytosol	51.61	76.73
GSMUA_Achr8P00540_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	23.54	76.65
TraesCS5B01G292200.1	Wheat	cytosol	74.91	75.18
TraesCS5A01G293000.1	Wheat	cytosol	74.43	74.97
TraesCS5D01G300300.2	Wheat	cytosol	74.91	74.64
EER99172	Sorghum	cytosol	73.84	73.92
Zm00001d021087_P003	Maize	cytosol	73.84	73.84
HORVU5Hr1G077570.15	Barley	cytosol	73.72	73.72
VIT_01s0150g00030.t01	Wine grape	cytosol	73.0	73.44
KRH45201	Soybean	cytosol	72.16	73.39
PGSC0003DMT400005756	Potato	cytosol	70.25	71.97
Solyc12g042180.1.1	Tomato	cytosol	19.24	71.88
Solyc05g023750.2.1	Tomato	cytosol	70.01	71.73
TraesCS7A01G263800.2	Wheat	cytosol	70.37	71.57
OQU80812	Sorghum	cytosol	69.89	71.0
HORVU7Hr1G055220.21	Barley	cytosol	70.01	70.52
Zm00001d031667_P006	Maize	cytosol	69.18	70.35
CDY09784	Canola	cytosol	67.03	70.3
Os08t0537600-01	Rice	plasma membrane	69.65	70.16
KRH01512	Soybean	cytosol	70.25	70.08
AT5G13300.1	Thale cress	cytosol	69.18	70.01
CDX69650	Canola	cytosol	68.1	69.01
CDX78515	Canola	cytosol	68.46	68.95
Bra008838.1-P	Field mustard	cytosol	67.86	68.77
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	69.53	68.71
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	69.53	68.71
Bra006193.1-P	Field mustard	cytosol	66.67	68.63
Zm00001d009353_P001	Maize	cytosol	9.68	66.94
Zm00001d015981_P001	Maize	peroxisome	11.71	64.05
VIT_17s0000g00310.t01	Wine grape	cytosol	62.37	63.12
AT5G61980.1	Thale cress	cytosol	61.89	62.56
Solyc03g118260.1.1	Tomato	cytosol	59.62	62.38
CDY00242	Canola	cytosol	58.3	62.01
Bra010046.1-P	Field mustard	cytosol	57.47	60.81
CDY30689	Canola	cytosol	62.37	60.56
Bra029295.1-P	Field mustard	cytosol	62.37	60.56
PGSC0003DMT400036762	Potato	cytosol	41.7	59.76
CDX86943	Canola	cytosol	49.94	58.71
KRH59741	Soybean	cytosol	55.79	58.38
KRH63858	Soybean	cytosol	54.48	58.09
Solyc12g042170.1.1	Tomato	cytosol	37.51	57.93
Zm00001d004245_P003	Maize	cytosol	12.9	56.25
Zm00001d015278_P001	Maize	mitochondrion	20.79	51.79
KRH54108	Soybean	cytosol	45.52	51.63
Zm00001d049871_P001	Maize	cytosol	11.59	50.79
GSMUA_Achr1P01960_001	Banana	cytosol	46.12	49.3
CDY53619	Canola	cytosol	18.16	45.1
Zm00001d023982_P001	Maize	cytosol	16.37	35.22
GSMUA_Achr4P23780_001	Banana	cytosol	10.04	17.65
GSMUA_Achr8P07470_001	Banana	cytosol	9.92	17.62
GSMUA_Achr1P08800_001	Banana	cytosol	9.32	16.32
GSMUA_Achr5P26280_001	Banana	cytosol	8.96	15.89
GSMUA_Achr2P18150_001	Banana	cytosol	7.65	15.84
GSMUA_Achr11P...	Banana	cytosol	7.41	15.42
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	8.6	15.13
GSMUA_Achr4P28870_001	Banana	cytosol	7.29	15.1
GSMUA_Achr4P21720_001	Banana	cytosol	7.29	15.02
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	8.12	14.95
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	7.05	14.9
GSMUA_AchrUn_...	Banana	mitochondrion	7.41	14.62
GSMUA_Achr10P...	Banana	mitochondrion	6.93	14.61
GSMUA_Achr7P15230_001	Banana	cytosol	7.53	14.42
GSMUA_Achr9P04020_001	Banana	mitochondrion	7.65	13.31
CDY08879	Canola	cytosol	2.63	6.98

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:BAR_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr4G00060_001	EnsemblPlants:GSMUA_Achr4P00060_001	EnsemblPlants:GSMUA_Achr4T00060_001	InterPro:IPR001164
InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770
InterPro:IPR038508	UniProt:M0SJS3	PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746
InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297
PANTHER:PTHR23180	PANTHER:PTHR23180:SF374	SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721
SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI000296F5CB	SEG:seg

Description

ADP-ribosylation factor GTPase-activating protein AGD3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G00060_001]

Coordinates

chr4:+:25633..47316

Molecular Weight (calculated)

93767.1 Da

IEP (calculated)

7.062

GRAVY (calculated)

-0.418

Length

837 amino acids

Sequence
(BLAST)

001: MYFAKLDDSP MFRKQIQSLE ESAESLRERC LKFYKGCRKY TEGLGEGYDG DIAFASSLEM FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: QMLNERLLQF VDTDLHDVKD ARKRFDRASL LYDQAREKYL ALKKGTKADI TTVLEDELHS ARSSFEQARF DLVTALSNIE AKKRYELLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYIHQVL AYAQQSRERS SYEQAALIER MQEFKRQIDR ESRWSANGSN DSPNGDGIQA IGRSSHKMIE AVMQTAAKGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQW SRSSGGHHPN QRGHNSSEHG PGLLSRWFSS HYHGGVHDEK CVARHTVNLL TSTIKVDADQ SDLRFCFRII
401: SPTKNYTLQA ESAMDQMDWI EKITGVIASL LSSQSPEQRL LTSPMSGGHH RAASESSSFG SSCDLDHLAS EESSLEKCSI GGHFDCSIRS SQQYRFNSKH
501: EKPIDVLRKV CGNDICADCG APEPDWASLN LGILLCIECS GVHRNLGVHI SKVRSLTLDV RVWEPSVINL FQSLGNTVAN TIWEESFPST SNGKCENVSS
601: FCIVDKTQGY YCINKPKHSD PITVKEKFIQ AKYVEKLFVH KTAADQLSVA QKMWESVRAN DMKAVYHHIV ASNADVNIIY GQASVNSSVT LAKAMLLQDQ
701: PTAVLDYSSS CLLGDSLQKS STMSSFSSVG TSDNINEVDD CFEGFTLLHL ACLTSDMAMV ELLLQYGANV NSIDLKGRTP LHHCILRGKH LFAKLLLTRG
801: ADPHATDEDG KTALQCAIEA GNIKDEEIIV LLGDPNR

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.