Factsheet for Zm00001d049872_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004245_P003
Zm00001d009353_P001
Zm00001d009504_P002
Zm00001d013705_P001
Zm00001d013996_P003
Zm00001d015278_P001
Zm00001d015981_P001
Zm00001d021087_P003
Zm00001d023982_P001
Zm00001d030661_P001
Zm00001d031667_P006
Zm00001d033283_P001
Zm00001d038955_P001
Zm00001d039404_P001
Zm00001d045530_P001
Zm00001d049871_P001
Zm00001d049872_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	Zm00001d013705_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d030661_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d033283_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d004245_P003	AT5G13300.1	15743878
AT5G13300.1	Zm00001d009353_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d015278_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d015981_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d021087_P003	AT5G13300.1	15743878
AT5G13300.1	Zm00001d023982_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d031667_P006	AT5G13300.1	15743878
AT5G13300.1	Zm00001d049871_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d049872_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d013996_P003	AT5G26980.1	15743878
AT5G13300.1	Zm00001d039404_P001	AT5G26980.1	15743878
AT5G13300.1	Zm00001d045530_P001	AT5G26980.1	15743878
AT5G13300.1	Zm00001d009504_P002	AT5G42080.1	15923323
AT5G13300.1	Zm00001d038955_P001	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015981_P001	Maize	peroxisome	26.78	96.08
Zm00001d009353_P001	Maize	cytosol	20.58	93.39
Zm00001d004245_P003	Maize	cytosol	28.42	81.25
Zm00001d016932_P001	Maize	endoplasmic reticulum	23.5	70.49
Zm00001d031462_P001	Maize	endoplasmic reticulum, extracellular	23.68	68.06
CDX70496	Canola	cytosol	65.76	65.28
OQU80812	Sorghum	cytosol	97.27	64.81
Zm00001d031667_P006	Maize	cytosol	95.99	64.03
Solyc12g042180.1.1	Tomato	cytosol	25.14	61.61
Os08t0537600-01	Rice	plasma membrane	87.07	57.52
TraesCS7A01G263800.2	Wheat	cytosol	85.61	57.11
HORVU7Hr1G055220.21	Barley	cytosol	85.25	56.32
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	84.52	54.78
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	84.52	54.78
Zm00001d021087_P003	Maize	cytosol	80.51	52.81
GSMUA_Achr11P...	Banana	cytosol	77.96	52.45
GSMUA_Achr4P00060_001	Banana	cytosol	78.14	51.25
PGSC0003DMT400005756	Potato	cytosol	74.68	50.18
Solyc05g023750.2.1	Tomato	cytosol	74.32	49.94
KRH45201	Soybean	cytosol	74.68	49.82
VIT_01s0150g00030.t01	Wine grape	cytosol	75.23	49.64
CDY09784	Canola	cytosol	71.4	49.12
AT5G13300.1	Thale cress	cytosol	73.41	48.73
CDX69650	Canola	cytosol	72.68	48.31
Bra008838.1-P	Field mustard	cytosol	72.31	48.06
CDX78515	Canola	cytosol	72.68	48.01
Zm00001d015278_P001	Maize	mitochondrion	29.14	47.62
KRH01512	Soybean	cytosol	72.68	47.56
Bra006193.1-P	Field mustard	cytosol	69.76	47.11
AT5G61980.1	Thale cress	cytosol	68.31	45.29
Zm00001d023982_P001	Maize	cytosol	31.88	44.99
Solyc03g118260.1.1	Tomato	cytosol	65.03	44.62
CDY00242	Canola	cytosol	63.02	43.96
Bra029295.1-P	Field mustard	cytosol	68.49	43.62
CDY30689	Canola	cytosol	68.31	43.5
VIT_17s0000g00310.t01	Wine grape	cytosol	65.03	43.17
Bra010046.1-P	Field mustard	cytosol	62.11	43.11
KRH63858	Soybean	cytosol	61.02	42.68
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	57.19	42.43
KRH59741	Soybean	cytosol	60.29	41.38
CDX86943	Canola	cytosol	50.27	38.76
KRH54108	Soybean	cytosol	51.18	38.08
Zm00001d051187_P009	Maize	plastid	48.63	37.87
PGSC0003DMT400036762	Potato	cytosol	39.53	37.16
Solyc12g042170.1.1	Tomato	cytosol	35.7	36.16
Zm00001d032879_P001	Maize	extracellular	11.29	28.57
CDY53619	Canola	cytosol	10.2	16.62
Zm00001d021802_P001	Maize	cytosol	10.2	11.69
Zm00001d006602_P001	Maize	cytosol	10.2	11.29
Zm00001d030031_P002	Maize	plastid	8.56	9.73
Zm00001d047020_P002	Maize	cytosol	7.47	9.32
Zm00001d012827_P002	Maize	cytosol	7.1	9.26
Zm00001d007856_P001	Maize	cytosol	4.55	9.19
Zm00001d034885_P002	Maize	cytosol	6.92	9.13
Zm00001d016547_P001	Maize	cytosol, plastid	8.56	8.83
Zm00001d046873_P001	Maize	cytosol, plastid	8.56	8.83
Zm00001d051030_P001	Maize	cytosol, plastid	8.56	8.83
Zm00001d047793_P001	Maize	extracellular, plasma membrane	7.29	8.83
Zm00001d028656_P001	Maize	mitochondrion	7.29	8.81
CDY08879	Canola	cytosol	1.28	2.22
Zm00001d049871_P001	Maize	cytosol	0.36	1.05
Zm00001d051188_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.29.30	MapMan:22.3.4.1	Gene3D:3.30.40.160	UniProt:A0A1D6PYH0	InterPro:AGD1/2/3/4_BAR_plant
InterPro:AH/BAR_dom_sf	ProteinID:AQK51500.1	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR011993	InterPro:IPR027267	InterPro:IPR038508
PFAM:PF00169	PFAM:PF01412	PFAM:PF16746	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00405
PFscan:PS50003	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF242	SMART:SM00105	SMART:SM00233
SUPFAM:SSF103657	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI000842BE30	EnsemblPlantsGene:Zm00001d049872	EnsemblPlants:Zm00001d049872_P001
EnsemblPlants:Zm00001d049872_T001	SEG:seg	:	:	:	:

Description

ADP-ribosylation factor GTPase-activating protein AGD1

Coordinates

chr4:-:49828071..49838035

Molecular Weight (calculated)

61772.7 Da

IEP (calculated)

7.387

GRAVY (calculated)

-0.565

Length

549 amino acids

Sequence
(BLAST)

001: MHFAKLDDSP MFRTQIQSLE ESAELLRERC LKFHKGCRKY AEGLGEAYDG DIAFASSLET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLNDRLLNF VDIDLHDVKD AHKRFDKASL SYDQIREKYL SLKKGTRPDI TTAIEDVTSL SHVEAKKRYE FLEAVSATMD SHLRYFKQVL AYAQQSRERA
201: NKEQASLVER MHEYKRQIDR ETRSSINGLN DSYNGDGIQT IGRSSHKQIE AVMQSTSKGK VQTIRQGYLS KRSSNLRADW KRRLFSSHYH GIVHDEKSVA
301: RHTVNLLTST IKVDADQSDL RFCFRIISPT KIYTLQAESA VDQMDWIEKI TGVIASLLNS QSPEQCFLSS PKGSGHDRST SDGSSFTSSV EFEPSVSDDL
401: VLEKKSGNGQ HDVRGTHHHR TSTKPEKPID LLRKVDGNNM CADCGASEPD WASLNLGALL CIECSGVHRN LGVHISKVRS LTLDVRVWEP SVINLFQSLG
501: NMFVNSIWEE TLPDDNSSAD GSDTSQYLSV SKPKHKDVFS AKEKFIHAK

Best Arabidopsis Sequence Match ( AT1G10870.1 )
(BLAST)

001: MATFINLEDS PMFQKQVCSL EGTADELKDR CQKLYKGVKK FMGTLGEASK GESAFAACLE EFGGGPDDPI SLSIGGPVIS KFINALRELA SYKEFLCSQV
101: EHVLLERLMN FISVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITKAI GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN ACAECNAPEP DWASLNLGVL
501: LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL GNVYCNSLWE GLLHLDDDCE DGSALSHASV SKPCPEDSFS VKEKYILGKY LEKALVIKDE
601: SEANLSAASR IWEAVQSRNI REIYRLIVTT GDVNIINTKF DDITDIDAYH HIDAAEKAVK KRHDPTVCQR IKESNEPRSC LQGCSLLHVA CHIGDSVLLE
701: LLLQFGADLN IRDYHGRTPL HHCISSGNHK FAKILLRRGA RPSIEDDGGL SVLERAMEMG AITDEELFLL LAECA

Arabidopsis Description

AGD4ARF-GAP domain 4 [Source:TAIR;Acc:AT1G10870]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.