Factsheet for Solyc03g118260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036762	Potato	cytosol	71.62	98.12
Solyc12g042180.1.1	Tomato	cytosol	21.62	77.23
Solyc12g042170.1.1	Tomato	cytosol	49.75	73.43
Zm00001d049872_P001	Maize	cytosol	44.62	65.03
Solyc05g023750.2.1	Tomato	cytosol	65.75	64.38
GSMUA_Achr11P...	Banana	cytosol	63.5	62.25
VIT_17s0000g00310.t01	Wine grape	cytosol	62.62	60.58
TraesCS5A01G293000.1	Wheat	cytosol	62.12	59.81
TraesCS5B01G292200.1	Wheat	cytosol	62.25	59.71
Os09t0510700-01	Rice	cytosol	62.38	59.69
GSMUA_Achr4P00060_001	Banana	cytosol	62.38	59.62
Zm00001d021087_P003	Maize	cytosol	62.12	59.38
EER99172	Sorghum	cytosol	62.0	59.33
Os08t0537600-01	Rice	plasma membrane	61.5	59.21
TraesCS5D01G300300.2	Wheat	cytosol	62.12	59.17
TraesCS7A01G263800.2	Wheat	cytosol	60.5	58.81
HORVU5Hr1G077570.15	Barley	cytosol	61.25	58.54
HORVU7Hr1G055220.21	Barley	cytosol	60.62	58.36
CDY00242	Canola	cytosol	57.38	58.32
AT5G61980.1	Thale cress	cytosol	60.25	58.21
OQU80812	Sorghum	cytosol	59.88	58.13
Zm00001d031667_P006	Maize	cytosol	59.75	58.08
Bra010046.1-P	Field mustard	cytosol	56.62	57.27
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	59.75	56.43
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	59.75	56.43
CDY30689	Canola	cytosol	60.12	55.8
Bra029295.1-P	Field mustard	cytosol	60.0	55.68
CDX86943	Canola	cytosol	49.5	55.62
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	50.5	54.59
Zm00001d009353_P001	Maize	cytosol	7.38	48.76
Zm00001d015981_P001	Maize	peroxisome	8.88	46.41
Solyc04g008660.2.1	Tomato	cytosol	44.38	45.45
Zm00001d015278_P001	Maize	mitochondrion	19.0	45.24
Zm00001d004245_P003	Maize	cytosol	10.0	41.67
Zm00001d049871_P001	Maize	cytosol	9.25	38.74
Zm00001d023982_P001	Maize	cytosol	14.25	29.31
Solyc03g098500.2.1	Tomato	nucleus	8.0	25.81
Solyc07g063550.2.1	Tomato	cytosol	11.12	18.74
Solyc10g006850.2.1	Tomato	cytosol	10.5	16.8
Solyc03g006610.2.1	Tomato	cytosol	9.62	16.52
Solyc08g005070.2.1	Tomato	cytosol	7.62	15.17
Solyc08g076920.2.1	Tomato	nucleus	7.25	14.08
Solyc10g084690.1.1	Tomato	mitochondrion	7.88	13.73
Solyc09g010520.2.1	Tomato	nucleus	7.88	13.49

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:BAR_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007010	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0030139	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267
InterPro:IPR036770	InterPro:IPR038508	UniProt:K4BLX7	PFAM:PF00169	PFAM:PF01412	PFAM:PF13637
PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115
PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374	SMART:SM00105	SMART:SM00233	SMART:SM00248
SMART:SM00721	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc03g118260.1
EnsemblPlants:Solyc03g118260.1.1	UniParc:UPI0002767C2E	SEG:seg	:	:	:

Description

ADP-ribosylation factor GTPase-activating protein AGD1 [Source:Projected from Arabidopsis thaliana (AT5G61980) UniProtKB/Swiss-Prot;Acc:Q9FIT8]

Coordinates

chr3:+:67171692..67186107

Molecular Weight (calculated)

90069.0 Da

IEP (calculated)

8.027

GRAVY (calculated)

-0.456

Length

800 amino acids

Sequence
(BLAST)

001: MQEGKTLFAR IDDSPMFRQQ IQSLEESSET LRDKCLKYYK GCRKYTEGLG EAYDKDIAFA SSLETFGGGR NDPISVAYGG PDMAKFATAL REIGTYKEVL
101: RSQVEHVLND RLLHLATIDL PDVKEARKRF DKANVAYDQV REKFLSLRKS TRMDIAAAIE EELYNARLSF EQARFNLVGA LSAVEAKKKY EFLEAVGSMM
201: DSHLRFFKQG YEVLHQMEPY ISQVLAYSQK ARESSMYEQA ALNERMQEYK KKIDQERRCS FNGSTNGDVT QPFSRSSHKL IEAVMQSASE GKVQTIKQGY
301: LSKRSSNIRG DWKRRFFVLD SRGMLYYYRK QLSRPSFQGS ASPLLSNRCS SPEPGSGLLS RWLSSHYHGG VHEEKSVARH TVNLLTSTIK ADADQSDLRF
401: CFRIISPTKN YTLQAESAAE QMDWIEKITG VITSLLTSQT PERHFSVSPI SESSSIGSPI DHDQRAMEEY TSGRDLTGRS FMRPSKSSVH ILSTKRERPV
501: EALKRIPGND KCADCGAPGP EWASLNLGLL ICIECSGVHR NFGVHISKVR SLKLDVKVWG PSIITLFEAL GNVFVNSVWE ELLHARKTFQ ADEIPMRFFE
601: SDKHKEFFGK PSYADHISVK EKFIHAKYAE KRFIHKVKDT THLLSVAEQL WEGVRANDKK AVYRLIVVYQ ADVNAVHGEE ASPGSDSSSS FNPQSESEEH
701: CIDEFLDGCS LLHLASQTAD IGMVELLLQY GANINACDSR GQTPLHHSVM RGRTATSKLL LARGANPHIA DLEGKTPCHL VSELALNDVE ILALLKVANR

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.