Factsheet for Solyc10g084690.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
golgi 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028571	Potato	mitochondrion	96.95	96.95
Solyc09g010520.2.1	Tomato	nucleus	75.16	73.88
VIT_08s0007g00010.t01	Wine grape	mitochondrion	67.76	66.88
GSMUA_AchrUn_...	Banana	mitochondrion	58.61	63.44
AT3G53710.2	Thale cress	cytosol	62.31	62.31
KRG95812	Soybean	endoplasmic reticulum	64.92	60.94
AT2G37550.1	Thale cress	mitochondrion	60.35	60.75
KRH67539	Soybean	mitochondrion	63.83	60.29
GSMUA_Achr7P15230_001	Banana	cytosol	57.3	60.18
Zm00001d047793_P001	Maize	extracellular, plasma membrane	59.26	60.04
Zm00001d007856_P001	Maize	cytosol	35.51	59.93
KRH32302	Soybean	mitochondrion	62.31	59.71
KRH19707	Soybean	cytosol	62.31	59.46
Os03t0278400-01	Rice	plasma membrane	58.61	59.38
GSMUA_Achr9P04020_001	Banana	mitochondrion	61.87	59.04
EER92462	Sorghum	mitochondrion	58.61	58.86
Zm00001d028656_P001	Maize	mitochondrion	57.73	58.37
TraesCS4A01G099400.1	Wheat	mitochondrion	58.39	57.51
TraesCS4B01G204900.1	Wheat	mitochondrion	57.95	57.33
TraesCS4D01G205800.1	Wheat	mitochondrion	58.17	57.05
GSMUA_Achr10P...	Banana	mitochondrion	49.24	56.93
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	55.56	56.04
CDY23645	Canola	cytosol	18.95	53.7
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	45.32	52.53
CDY16083	Canola	cytosol	26.8	52.12
Bra026910.1-P	Field mustard	plastid	19.61	49.72
CDY26647	Canola	plastid	19.61	49.72
HORVU4Hr1G059060.2	Barley	mitochondrion	58.17	46.35
Solyc03g098500.2.1	Tomato	nucleus	11.98	22.18
Solyc08g005070.2.1	Tomato	cytosol	18.95	21.64
Solyc08g076920.2.1	Tomato	nucleus	18.95	21.12
Solyc07g063550.2.1	Tomato	cytosol	18.74	18.11
Solyc10g006850.2.1	Tomato	cytosol	17.86	16.4
Solyc03g006610.2.1	Tomato	cytosol	15.69	15.45
Solyc12g042170.1.1	Tomato	cytosol	13.94	11.81
Solyc05g023750.2.1	Tomato	cytosol	15.9	8.94
Solyc03g118260.1.1	Tomato	cytosol	13.73	7.88
Solyc04g008660.2.1	Tomato	cytosol	12.85	7.55
Zm00001d032879_P001	Maize	extracellular	0.87	1.84
Solyc12g042180.1.1	Tomato	cytosol	0.22	0.45

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:K4D3Q3	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105	SUPFAM:SSF57863	EnsemblPlantsGene:Solyc10g084690.1	EnsemblPlants:Solyc10g084690.1.1
UniParc:UPI000276A406	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:64123480..64126661

Molecular Weight (calculated)

49390.3 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.914

Length

459 amino acids

Sequence
(BLAST)

001: MAASRRLRDL QAQTGNKVCV DCSQKNPQWA SVSYGVFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQLR KMELGGNEKL NKFMSQYGIP KETDIVTKYN
101: TKSASVYRDR IQNLAEGKPW QDPPVVKESV KGPNSSSSRP PLSGSRIGNS GGNSGWDNWD SFDEGGDSNS SMRRNQTVGD FRSGGGSDGG PARSRSTDDV
201: TMAQYEASAA NKDNFFARKM AENDSRPEGL PPSQGGKYVG FGSSSGSMPR NNNNNSQGDV FSAVTQGFGR LSMMAASAAQ SAATVVQAGT KEIGSKVAEG
301: GYDYKMNETV NVVATKTTEI GQKGWGIMKG VLALASQKVE EFAEGPNPRD DSWQRSENER NGHYKESSQA SKGWNSSGGA QSSGRQANAV SSASWDDWDS
401: KDNKKENPTG GATSSNDDGW AGWDDGKDDG FDNFQRAPNN KHVAHGGKSE SKWTDGGFL

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.