Factsheet for TraesCS4A01G099400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G204900.1	Wheat	mitochondrion	97.85	98.28
TraesCS4D01G205800.1	Wheat	mitochondrion	97.85	97.44
Os03t0278400-01	Rice	plasma membrane	83.26	85.65
Zm00001d028656_P001	Maize	mitochondrion	82.4	84.58
EER92462	Sorghum	mitochondrion	81.76	83.37
Zm00001d047793_P001	Maize	extracellular, plasma membrane	80.69	83.0
HORVU4Hr1G059060.2	Barley	mitochondrion	96.78	78.3
AT3G53710.2	Thale cress	cytosol	59.44	60.35
GSMUA_Achr10P...	Banana	mitochondrion	50.64	59.45
PGSC0003DMT400023046	Potato	mitochondrion	58.58	58.46
Solyc10g084690.1.1	Tomato	mitochondrion	57.51	58.39
Solyc09g010520.2.1	Tomato	nucleus	58.37	58.24
PGSC0003DMT400028571	Potato	mitochondrion	57.3	58.17
AT2G37550.1	Thale cress	mitochondrion	56.44	57.68
KRH67539	Soybean	mitochondrion	59.87	57.41
KRG95812	Soybean	endoplasmic reticulum	59.66	56.85
KRH19707	Soybean	cytosol	57.94	56.13
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	47.64	56.06
KRH32302	Soybean	mitochondrion	57.08	55.53
CDY16083	Canola	cytosol	26.39	52.12
CDY23645	Canola	cytosol	18.03	51.85
CDY26647	Canola	plastid	19.1	49.17
Bra026910.1-P	Field mustard	plastid	19.1	49.17
VIT_00s0250g00050.t01	Wine grape	plastid	43.78	47.55
TraesCS1A01G193000.1	Wheat	cytosol	18.88	21.73
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	18.88	21.26
TraesCS2A01G203600.1	Wheat	cytosol	16.09	15.79
TraesCS5A01G293000.1	Wheat	cytosol	14.16	7.94
TraesCS7A01G263800.2	Wheat	cytosol	13.09	7.41
TraesCS6A01G221400.1	Wheat	cytosol	10.94	6.68

Protein Annotations

EnsemblPlants:TraesCS4A01G099400.1	EnsemblPlantsGene:TraesCS4A01G099400	Gene3D:3.30.40.160	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150
GO:GO:0030234	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:IPR001164	InterPro:IPR038508
PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	PFAM:PF01412	PFscan:PS50115	PRINTS:PR00405	SEG:seg
SMART:SM00105	SUPFAM:SSF57863	MapMan:22.3.4.2	:	:	:

Description

No Description!

Coordinates

chr4A:-:111904107..111906788

Molecular Weight (calculated)

49946.9 Da

IEP (calculated)

6.532

GRAVY (calculated)

-0.938

Length

466 amino acids

Sequence
(BLAST)

001: MASTAARRLR ELQGQPGNKT CVDCAQRNPQ WASVSYGVFM CLECSGKHRG LGVHISFVRS VTMDSWTEPQ LRKMEAGGND RLNAFLTARG VPKDTPHIPK
101: YNSNAAAAYR DRIVALAEGR AWTDPPVVKE TPGSGAPAPA RRPPLPAGVG GGGGGGGGGW DDWDDEVRPD MRRNQSAGSF AGAGADSGRQ PTRSKSTQDI
201: YTKQELEASA ASKEDFFARR MAENESKPQG IPPSQGGKYV GFGSTPPPSA NRNNNGAAQG DVMQVVSQGF GRLSLVAASA AQSAATVVQV GTKEIQSKMR
301: EGGYDQKVNE TVNVVTNKTA EIGSRTWGIM KGVMALATQK VEEYAKEGGV GGGWGDDWQQ REQQNNSNEP YRRYDQETSN GNGWNSPQDG SAKNQNHNSN
401: SWDDWDDQDK KEEPAKTSQS SDSWAGWDDA KDDGFDSYSH HSPANKGGSN QNGTAGGSYW ADGGFR

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.