CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95812	Soybean	endoplasmic reticulum	94.03	93.46
KRH19707	Soybean	cytosol	73.46	74.22
KRH32302	Soybean	mitochondrion	72.63	73.7
VIT_08s0007g00010.t01	Wine grape	mitochondrion	66.67	69.68
AT3G53710.2	Thale cress	cytosol	61.73	65.36
AT2G37550.1	Thale cress	mitochondrion	60.49	64.47
Solyc09g010520.2.1	Tomato	nucleus	61.93	64.45
PGSC0003DMT400023046	Potato	mitochondrion	61.52	64.03
Solyc10g084690.1.1	Tomato	mitochondrion	60.29	63.83
PGSC0003DMT400028571	Potato	mitochondrion	60.08	63.62
GSMUA_AchrUn_...	Banana	mitochondrion	55.35	63.44
Os03t0278400-01	Rice	plasma membrane	58.64	62.91
EER92462	Sorghum	mitochondrion	58.85	62.58
Zm00001d007856_P001	Maize	cytosol	34.98	62.5
Zm00001d047793_P001	Maize	extracellular, plasma membrane	57.82	62.03
Zm00001d028656_P001	Maize	mitochondrion	57.82	61.89
GSMUA_Achr7P15230_001	Banana	cytosol	54.94	61.1
TraesCS4A01G099400.1	Wheat	mitochondrion	57.41	59.87
TraesCS4D01G205800.1	Wheat	mitochondrion	57.0	59.19
TraesCS4B01G204900.1	Wheat	mitochondrion	56.38	59.05
GSMUA_Achr9P04020_001	Banana	mitochondrion	57.41	58.0
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	52.47	56.04
GSMUA_Achr10P...	Banana	mitochondrion	45.47	55.67
CDY23645	Canola	cytosol	17.7	53.09
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	43.0	52.78
CDY16083	Canola	cytosol	25.1	51.69
Bra026910.1-P	Field mustard	plastid	18.31	49.17
CDY26647	Canola	plastid	18.31	49.17
HORVU4Hr1G059060.2	Barley	mitochondrion	57.61	48.61
KRH15700	Soybean	cytosol	9.47	23.71
KRH75607	Soybean	cytosol	17.9	21.59
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	17.7	21.34
KRH38902	Soybean	cytosol	10.08	20.16
KRH09434	Soybean	cytosol	9.88	19.67
KRH22157	Soybean	cytosol	17.49	17.67
KRH26038	Soybean	cytosol	18.11	17.6
KRH27179	Soybean	cytosol	17.08	17.15
KRH41906	Soybean	cytosol	10.29	16.72
KRH55419	Soybean	cytosol	16.67	15.7
KRH30767	Soybean	nucleus	6.58	13.17
KRH63858	Soybean	cytosol	12.96	8.03
KRH59741	Soybean	cytosol	12.76	7.75
KRH45201	Soybean	cytosol	12.96	7.65
KRH29237	Soybean	cytosol	12.14	7.6
KRH01512	Soybean	cytosol	12.96	7.51
KRH24228	Soybean	cytosol	11.73	7.35
KRH54108	Soybean	cytosol	10.91	7.18
Zm00001d032879_P001	Maize	extracellular	0.82	1.84

Protein Annotations

EntrezGene:100801306	MapMan:22.3.4.2	Gene3D:3.30.40.160	EMBL:ACUP02002066	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	EnsemblPlantsGene:GLYMA_03G171800	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150
GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	UniProt:I1JPD0	InterPro:IPR001164	InterPro:IPR038508
EnsemblPlants:KRH67539	ProteinID:KRH67539	ProteinID:KRH67539.1	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI000233A7A2	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:38622693..38626942

Molecular Weight (calculated)

52910.0 Da

IEP (calculated)

7.183

GRAVY (calculated)

-0.983

Length

486 amino acids

Sequence
(BLAST)

001: MAASRRLRDL QSQPANKICV DCSQKNPQWA SVSYGVFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIK KMEAGGNDKL NAFLTQYGIP KETDIVAKYN
101: SNAAAVYRDR IQALADGRPW RDPPVVKEAV RSSASKGKPP LSAGNNNNGG WDNWDPDDGF GSARGGADLR RNQSTGDVRG FGGGGNVSRS KSTQDMYTRA
201: ELEASAANKE DFFARKRAEN ESRPEGLPPS QGGKYVGFGS GPAPNQTGVN QQNDYLSVVS QGFGKLSLAA ANVVQAGTKE FSAKVKEGGY DYKVNETVNV
301: VSQKTSEIGQ RTWGIMKGVM ALASQKVEEF ARDNPNWMSD NWQRNESDRN GFYQEFNREN NGRNSSTREG QHSSGGQTNT FHSSSWDDWG HNDSRKEETA
401: KGSAPQSSGG KFDNNYNSSS WDDWDQEDTR KKEPAKGSAA HSSDGWTGWD NAKDDGFDDI YGSASNNKGG AHNDKSGAAW TGGGFL

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.