CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29237	Soybean	cytosol	96.65	96.65
CDX97917	Canola	cytosol	63.66	64.24
Bra019896.1-P	Field mustard	cytosol	63.53	64.03
CDY19326	Canola	cytosol	63.27	63.85
CDY40502	Canola	cytosol	62.24	63.3
AT1G60860.1	Thale cress	cytosol	63.27	63.27
Bra027124.1-P	Field mustard	cytosol	61.08	62.29
CDY54764	Canola	cytosol	61.08	62.2
AT1G10870.2	Thale cress	cytosol	62.5	62.18
Solyc04g008660.2.1	Tomato	cytosol	60.18	59.8
GSMUA_Achr1P01960_001	Banana	cytosol	59.41	58.88
PGSC0003DMT400076862	Potato	cytosol	9.66	58.14
TraesCS6D01G213800.1	Wheat	cytosol	54.64	55.57
TraesCS6B01G259800.1	Wheat	cytosol	54.9	55.54
TraesCS6A01G221400.1	Wheat	cytosol	54.51	55.44
Os02t0632500-01	Rice	cytosol, plasma membrane	53.74	54.87
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	48.84	52.93
OQU85359	Sorghum	cytosol, mitochondrion, plastid	56.44	52.2
HORVU6Hr1G059210.10	Barley	cytosol, plastid	47.42	51.98
Zm00001d051188_P001	Maize	cytosol	8.38	49.24
Zm00001d051187_P009	Maize	plastid	44.72	49.22
PGSC0003DMT400008126	Potato	cytosol	13.14	47.66
PGSC0003DMT400013119	Potato	cytosol	12.37	46.15
KRH45201	Soybean	cytosol	48.71	45.93
KRH01512	Soybean	cytosol	47.55	43.98
KRH63858	Soybean	cytosol	43.3	42.8
KRH59741	Soybean	cytosol	44.07	42.75
KRH54108	Soybean	cytosol	35.82	37.67
KRH15700	Soybean	cytosol	7.35	29.38
KRH38902	Soybean	cytosol	7.35	23.46
KRH09434	Soybean	cytosol	7.35	23.36
KRH41906	Soybean	cytosol	7.99	20.74
KRH22157	Soybean	cytosol	9.92	16.01
KRH27179	Soybean	cytosol	9.92	15.91
KRH26038	Soybean	cytosol	9.92	15.4
KRH75607	Soybean	cytosol	7.6	14.64
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	7.47	14.39
KRH55419	Soybean	cytosol	9.41	14.15
KRH19707	Soybean	cytosol	7.86	12.68
KRH32302	Soybean	mitochondrion	7.47	12.11
KRG95812	Soybean	endoplasmic reticulum	7.6	12.07
KRH67539	Soybean	mitochondrion	7.35	11.73
KRH30767	Soybean	nucleus	3.48	11.11

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	EntrezGene:100796740	MapMan:22.3.4.1	Gene3D:3.30.40.160	EMBL:ACUP02007172
InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G029500	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164
InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770
InterPro:IPR038508	UniProt:K7LSS6	EnsemblPlants:KRH24228	ProteinID:KRH24228	ProteinID:KRH24228.1	PFAM:PF00169
PFAM:PF01412	PFAM:PF12796	PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003
PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF244	SMART:SM00105
SMART:SM00233	SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729
SUPFAM:SSF57863	UniParc:UPI000233C2DB	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:2192414..2205662

Molecular Weight (calculated)

87631.7 Da

IEP (calculated)

6.435

GRAVY (calculated)

-0.453

Length

776 amino acids

Sequence
(BLAST)

001: MASAFVKLDD SPMFQRQLYS LEETTDELTD RCQKLYKGCK KFMTALGEAY NGEISFADSL EVFGGGQDDP VSVSIGGPVI SKFITTLREL ASFKELLRSQ
101: VEHVLIDRLT EFMNLDLQGA KDSRRRFDKA VHSYDQSREK FVSLKKNTPE DVVAELEEDL QNSKSAFEKS RFNLVNSLMN IEVKKKYEFL ESISAIMDAH
201: LRYFKLGYDL LSQMEPYIHQ VLTYAQQSKE LANIEQDKLA KRIQEYRTQA ELENIRASSN YTETVPGSDG THVVGLNSYR SFEAGVQPAT TKGEVQTVKQ
301: GYLLKRSSSS RGDWKRRFFV LDNQGNLYYY RVKGVKPMGS QSYNYSRLSE QNSGMFGRFR SRHNRASSLN EDILGSCTVD LCTSTIKMDA DDTDLRLCFR
401: IISPSKSYTL QAENEADRMD WVNKITGAIT SLFNSQFLQQ PQFGRVHSQN RNSATGASLA SQSEDSQKSL RDDVYSKEVG SVSKILRGIP GNDKCAECSA
501: PEPDWASLNL GILLCIECSG VHRNLGVHVS KVRSITLDVR VWENTVLELF DNLGNAYCNS IWEGLLLLDH ERVGEPNVPM KPCSADAFQH KEKYIQAKYV
601: EKSLIIREED IPENPSVSIR IWQAVQAVNV REVYRLIATS TSNLINTKYY DEAHHAADAK GHQHGPEACL KVEETTETER CFRGWSLLHL ACHSGSALMV
701: ELLLQFGADV NMCDYHERTP LHHCITSGKN QLAKFLLRRG ARPSVKDAGG LTVLERAMER GAITDEELFI LLAECQ

Best Arabidopsis Sequence Match ( AT1G60860.1 )
(BLAST)

001: MAGFINLEDS PMFQKQVFSL EGTSDELKDR CQKLYKGVKK FMGALGEAST GVSAFADSLE EFGAGHDDPV SVSIGGPVIS KFINTLRELS SYKEFLRSQV
101: EHVLLERLTN FMTVDLQEAK ESRRRFDKAV HSYDQAREKF VSLKKNTRGD IVAELEEDLE NSKSAFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDSHF
201: KYFKLGYDLL SQLEPYIHQV LTYAQQSKEQ SKIEQDRFAQ RIQEFRTQSE LDSQQASAKA DPSDVGGNHV YRAIPRKNVE ANSVSTADKE VTKQGYLLKR
301: SASLRADWKR RFFVLDNHGS LYYYRNTGNK SAKSQHYYSG LGEHSSGVFG RFRTRHNRSA SQGSLDCNMI DLRTSLIKLD AEDTDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITAAI TIRLNSHFLQ QSPARYLDKK NTSSGPATEN LTLNQKEDYN QRLNVGDDVL TILREIPGNN TCAECNAPDP DWASLNLGVL
501: MCIECSGVHR NLGVHISKVR SLTLDVKVWE PTILDLFRNL GNGYCNSVWE ELLHHLDDDS EKGSTDTLAS VSKPSSEDWF TLKEKYINGK YLEKALVVKD
601: EREANSTASS RIWEAVQSRN IRDIYRLIVK ADANIINTKF DDITDLDVYH HHHVDAPDEV KKRHDPNACQ RIKNSNEARN CLQGCSLLHV ACQSGDPILL
701: ELLLQFGADI NMRDYHGRTP LHHCIASGNN AFAKVLLRRG ARPSIEDGGG LSVLERAMEM GAITDEELFL LLAECQ

Arabidopsis Description

AGD2ADP-ribosylation factor GTPase-activating protein AGD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.