Factsheet for PGSC0003DMT400076862

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013119	Potato	cytosol	63.57	39.42
PGSC0003DMT400008126	Potato	cytosol	62.02	37.38
PGSC0003DMT400068809	Potato	plastid	34.88	20.83
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	33.33	18.3
Solyc04g008660.2.1	Tomato	cytosol	68.99	11.4
PGSC0003DMT400037441	Potato	cytosol	28.68	10.82
PGSC0003DMT400036762	Potato	cytosol	45.74	10.1
PGSC0003DMT400049649	Potato	cytosol	35.66	9.68
PGSC0003DMT400012918	Potato	cytosol	34.88	9.68
KRH24228	Soybean	cytosol	58.14	9.66
PGSC0003DMT400064425	Potato	cytosol	34.88	9.55
KRH29237	Soybean	cytosol	56.59	9.41
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	51.94	9.36
HORVU6Hr1G059210.10	Barley	cytosol, plastid	51.16	9.32
AT1G60860.1	Thale cress	cytosol	55.81	9.28
TraesCS6D01G213800.1	Wheat	cytosol	54.26	9.17
TraesCS6A01G221400.1	Wheat	cytosol	54.26	9.17
TraesCS6B01G259800.1	Wheat	cytosol	54.26	9.13
CDX97917	Canola	cytosol	54.26	9.1
AT1G10870.2	Thale cress	cytosol	54.26	8.97
Bra019896.1-P	Field mustard	cytosol	53.49	8.96
Os02t0632500-01	Rice	cytosol, plasma membrane	52.71	8.95
GSMUA_Achr1P01960_001	Banana	cytosol	53.49	8.81
CDY19326	Canola	cytosol	51.94	8.71
Zm00001d051187_P009	Maize	plastid	47.29	8.65
PGSC0003DMT400045159	Potato	cytosol	27.13	8.5
PGSC0003DMT400002955	Potato	cytosol	26.36	8.37
CDY40502	Canola	cytosol	48.84	8.26
OQU85359	Sorghum	cytosol, mitochondrion, plastid	53.49	8.22
PGSC0003DMT400005756	Potato	cytosol	48.84	7.71
Bra027124.1-P	Field mustard	cytosol	44.19	7.49
CDY54764	Canola	cytosol	44.19	7.48
PGSC0003DMT400028571	Potato	mitochondrion	25.58	7.19
PGSC0003DMT400023046	Potato	mitochondrion	25.58	7.07
Zm00001d051188_P001	Maize	cytosol	3.88	3.79
PGSC0003DMT400037443	Potato	cytosol	2.33	1.47

Protein Annotations

Gene3D:3.30.40.160	MapMan:35.1	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:M1CXI4	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400029896	PGSC:PGSC0003DMG400029896
EnsemblPlants:PGSC0003DMT400076862	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF244	SMART:SM00105
SUPFAM:SSF57863	UniParc:UPI0002968C8B	:	:	:	:

Description

Gcn4-complementing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029896]

Coordinates

chr8:+:20572434..20573247

Molecular Weight (calculated)

14842.0 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.188

Length

129 amino acids

Sequence
(BLAST)

001: LREVPGNDKC FDCGASEPDW ASLNLGILIC IECSGIHQNL GVHISKVRSI TLDVRIWEPT ILDLFRTLGN SYYNSMWEKL LQLPSDGFNV EGPLRAKKRQ
101: NVERYQRSQN SNLTVPRIMF TFLFILQLK

Best Arabidopsis Sequence Match ( AT1G60860.3 )
(BLAST)

001: MQVNSLMTIE AKKKYEFLES ISAIMDSHFK YFKLGYDLLS QLEPYIHQVL TYAQQSKEQS KIEQDRFAQR IQEFRTQSEL DSQQASAKAD PSDVGGNHVY
101: RAIPRKNVEA NSVSTADKEV TKQGYLLKRS ASLRADWKRR FFVLDNHGSL YYYRNTGNKS AKSQHYYSGL GEHSSGVFGR FRTRHNRSAS QGSLDCNMID
201: LRTSLIKLDA EDTDLRLCFR IISPQKTYTL QAENGADRMD WVNKITAAIT IRLNSHFLQQ SPARYLDKKN TSSGPATENL TLNQKEDYNQ RLNVGDDVLT
301: ILREIPGNNT CAECNAPDPD WASLNLGVLM CIECSGVHRN LGVHISKVRS LTLDVKVWEP TILDLFRNLG NGYCNSVWEE LLHHLDDDSE KGSTDTLASV
401: SKPSSEDWFT LKEKYINGKY LEKALVVKDE REANSTASSR IWEAVQSRNI RDIYRLIVKA DANIINTKFD DITDLDVYHH HHVDAPDEVK KRHDPNACQR
501: IKNSNEARNC LQGCSLLHVA CQSGDPILLE LLLQFGADIN MRDYHGRTPL HHCIASGNNA FAKVLLRRGA RPSIEDGGGL SVLERAMEMG AITDEELFLL
601: LAECQ

Arabidopsis Description

AGD2ADP-ribosylation factor GTPase-activating protein AGD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.