Factsheet for PGSC0003DMT400012918

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006610.2.1	Tomato	cytosol	90.11	89.91
CDY71222	Canola	cytosol	16.77	81.25
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	21.94	43.4
PGSC0003DMT400049649	Potato	cytosol	40.0	39.16
PGSC0003DMT400064425	Potato	cytosol	38.28	37.79
VIT_00s0404g00040.t01	Wine grape	cytosol	41.08	37.67
GSMUA_Achr8P07470_001	Banana	cytosol	37.42	36.94
Os07t0563800-02	Rice	cytosol	37.63	36.76
EER99548	Sorghum	cytosol	36.56	35.94
TraesCS2D01G212100.1	Wheat	cytosol	36.34	35.58
TraesCS2B01G230900.1	Wheat	cytosol	36.34	35.58
TraesCS2A01G203600.1	Wheat	cytosol	36.34	35.58
Zm00001d021802_P001	Maize	cytosol	36.56	35.49
PGSC0003DMT400076862	Potato	cytosol	9.68	34.88
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	35.7	34.87
GSMUA_Achr5P26280_001	Banana	cytosol	34.62	34.11
Zm00001d006602_P001	Maize	cytosol	36.34	34.07
PGSC0003DMT400013119	Potato	cytosol	10.54	23.56
PGSC0003DMT400008126	Potato	cytosol	9.89	21.5
PGSC0003DMT400002955	Potato	cytosol	14.19	16.26
PGSC0003DMT400028571	Potato	mitochondrion	15.48	15.69
PGSC0003DMT400023046	Potato	mitochondrion	15.7	15.63
PGSC0003DMT400045159	Potato	cytosol	13.76	15.53
PGSC0003DMT400068809	Potato	plastid	6.45	13.89
PGSC0003DMT400036762	Potato	cytosol	15.91	12.67
PGSC0003DMT400037443	Potato	cytosol	4.52	10.29
PGSC0003DMT400005756	Potato	cytosol	17.2	9.79
PGSC0003DMT400037441	Potato	cytosol	6.88	9.36

Protein Annotations

EntrezGene:102579832	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	UniProt:M1A209	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400005035
PGSC:PGSC0003DMG400005035	EnsemblPlants:PGSC0003DMT400012918	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160
SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0002951DBB	RefSeq:XP_006343259.1	SEG:seg	:

Description

ARF GAP-like zinc finger-containing protein ZIGA3 [Source:PGSC_GENE;Acc:PGSC0003DMG400005035]

Coordinates

chr3:+:2143393..2149737

Molecular Weight (calculated)

51078.2 Da

IEP (calculated)

10.200

GRAVY (calculated)

-0.637

Length

465 amino acids

Sequence
(BLAST)

001: MNEKSRVSKE LNAKHTKILE GLLKLPENRE CADCKARGPR WASVNLGIFI CLHCSGVHRS LGVHISKVRS ATLDTWLPDQ VAFIQTMGNQ KSNSYWEAEL
101: PAKSDRVGIE NFIRAKYVEK RWILRNVSVK SSSGGRGERN SASKPKSDRD AEFIKRSMSF TQERKSSPLP DADRTTLALR NRLHNAPSES PKQLQAAPDP
201: KPEVIQTAKP VASVEEPKPK ANVSPDPREN VVQNVEPSIS QVAKAKPEAN FSPIVSTTII NYAASVSKSY KEATKANGSV SKTQSVASPQ PAEPKAVIQQ
301: NATIENKNKF DAGIEELIKD FQWNTQPVSA NPLNNVINEQ QQTSPAPHQR QLMPATMNHF SGSQTAYQSS NSNQYISQNW GSIGSQVIHG TKQMGGTQYI
401: HASTPPAYAM NSSMFSAMQG VPMNGTTSTG AIRPLSSFPT VPVVSMQSGY NYDFSSLTHQ MLSRR

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.