Factsheet for PGSC0003DMT400045159

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076920.2.1	Tomato	nucleus	97.33	97.33
PGSC0003DMT400002955	Potato	cytosol	80.58	81.77
VIT_02s0012g01330.t01	Wine grape	cytosol	71.84	73.09
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	70.87	72.46
KRH75607	Soybean	cytosol	70.15	71.71
AT5G46750.1	Thale cress	cytosol	65.29	66.92
CDX90439	Canola	cytosol	66.26	66.59
Bra013265.1-P	Field mustard	cytosol	63.35	66.24
CDX77687	Canola	cytosol	64.56	66.17
GSMUA_Achr11P...	Banana	cytosol	64.56	66.17
CDY44506	Canola	cytosol	63.59	66.16
CDY58500	Canola	cytosol	64.32	66.08
CDY01499	Canola	cytosol	65.05	65.85
CDX78809	Canola	cytosol	62.38	65.73
Bra024999.1-P	Field mustard	cytosol	58.01	65.48
AT4G17890.1	Thale cress	cytosol	65.05	64.89
GSMUA_Achr2P18150_001	Banana	cytosol	62.86	64.11
Os10t0574800-01	Rice	plasma membrane	63.11	63.88
GSMUA_Achr4P28870_001	Banana	cytosol	62.62	63.86
GSMUA_Achr4P21720_001	Banana	cytosol	62.86	63.79
EER91883	Sorghum	cytosol	62.86	63.64
AT2G35210.1	Thale cress	cytosol	60.92	63.54
EER90493	Sorghum	cytosol	63.84	63.22
TraesCS1A01G193000.1	Wheat	cytosol	61.41	62.47
TraesCS1D01G196700.1	Wheat	cytosol	61.16	62.22
Os03t0854100-01	Rice	cytosol	62.14	62.14
Zm00001d034885_P002	Maize	cytosol	62.62	62.02
CDY59045	Canola	cytosol	58.98	61.83
Zm00001d012827_P002	Maize	cytosol	62.86	61.52
Bra017330.1-P	Field mustard	cytosol	58.5	61.17
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	61.41	61.11
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	60.92	60.63
Zm00001d047020_P002	Maize	cytosol	62.86	58.86
TraesCS5B01G554600.1	Wheat	cytosol, plastid	60.92	54.33
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	61.41	53.72
Zm00001d030031_P002	Maize	plastid	62.14	53.0
HORVU5Hr1G123590.1	Barley	cytosol	60.92	51.54
PGSC0003DMT400076862	Potato	cytosol	8.5	27.13
HORVU1Hr1G047800.23	Barley	plastid	22.09	26.92
Bra012634.1-P	Field mustard	cytosol	66.02	26.59
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	12.38	21.7
PGSC0003DMT400028571	Potato	mitochondrion	21.6	19.39
PGSC0003DMT400023046	Potato	mitochondrion	21.84	19.27
PGSC0003DMT400008126	Potato	cytosol	8.98	17.29
PGSC0003DMT400049649	Potato	cytosol	19.17	16.63
PGSC0003DMT400013119	Potato	cytosol	8.25	16.35
PGSC0003DMT400064425	Potato	cytosol	17.72	15.5
PGSC0003DMT400012918	Potato	cytosol	15.53	13.76
PGSC0003DMT400068809	Potato	plastid	5.83	11.11
PGSC0003DMT400037443	Potato	cytosol	5.34	10.78
PGSC0003DMT400036762	Potato	cytosol	13.35	9.42
PGSC0003DMT400005756	Potato	cytosol	15.29	7.71
PGSC0003DMT400037441	Potato	cytosol	5.83	7.02

Protein Annotations

EntrezGene:102597971	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	UniProt:M1BH67	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400017515
PGSC:PGSC0003DMG400017515	EnsemblPlants:PGSC0003DMT400045159	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF381
SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0002965AC2	RefSeq:XP_006352857.1	SEG:seg	:

Description

Arf gtpase-activating protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017515]

Coordinates

chr8:-:49585458..49592224

Molecular Weight (calculated)

44339.8 Da

IEP (calculated)

9.748

GRAVY (calculated)

-0.527

Length

412 amino acids

Sequence
(BLAST)

001: MASGNFSDKN AVFRKLKSKP ENKMCFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SPEQLKMMYF GGNNRAQVFF KQHGWNDGGK
101: TDSKYTSRAA DLYRQLLSKE VAKSTAEEAA LQAALPAALP ASLVASQAAQ ATNVFPDIKT REPPKETSSL KDEKTEVTAS PKASQAVTTF LKKPTVAKKA
201: GKSGGLGARK LTKKSSESLY EQKPEEPPVQ VPSSNAASNA PTVGSSFASR FEYTYNVQPA ETSSGGSRVL NHVAPPKSTS FFSDYGMDSG FTKKTSSNSS
301: KVQIEETDEA RKKFTNAKSI SSAQFFGDQS KAAKEASVSL QKYSGSSAIS SADLFGQDDG AAYEITAGEL INRISFQAQQ DMSSIKNIAG ETGKKLSSLA
401: SNLMSDLQDR IL

Best Arabidopsis Sequence Match ( AT5G46750.1 )
(BLAST)

001: MATENLTDKN VVFRKLKSKS ENKVCFDCSA KNPTWASVPY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SPEQLRTMMF GGNNRAQVFF KQHGWNDGGK
101: IEAKYTSRAA DMYRQTLAKE VAKAMAEETV LPSLSSVATS QPVESSENGF TSESPKESSL KQEAAVVSSP KASQKVVAST FKKPLVSRKS GKTGGLGARK
201: LTTKSKDNLY EQKPEEPVPV IPAASPTNDT SAAGSSFASR FEYFDDEQSG GQSGTRVLSH VAPPKSSNFF NEFGMDSAFP KKSSSSSSKA QVEETDEARK
301: KFSNAKSISS AQFFGNQNRD ADLDSKATLQ KFSGSAAISS SDLFGHGPDD SNIDITASDL INRISFQAQQ DMSSIANLAE ETKNKLGTFA SSIFSDLQDR
401: ML

Arabidopsis Description

AGD9AGD9 [Source:UniProtKB/TrEMBL;Acc:A0A178UAW4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.