Factsheet for Bra013265.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78809	Canola	cytosol	97.21	97.95
CDY44506	Canola	cytosol	95.43	94.95
AT4G17890.1	Thale cress	cytosol	90.61	86.44
Bra024999.1-P	Field mustard	cytosol	70.56	76.16
VIT_02s0012g01330.t01	Wine grape	cytosol	69.8	67.9
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	69.29	67.74
KRH75607	Soybean	cytosol	68.27	66.75
Solyc08g005070.2.1	Tomato	cytosol	65.48	64.18
Solyc08g076920.2.1	Tomato	nucleus	67.01	64.08
GSMUA_Achr4P28870_001	Banana	cytosol	65.23	63.61
PGSC0003DMT400002955	Potato	cytosol	65.48	63.55
PGSC0003DMT400045159	Potato	cytosol	66.24	63.35
GSMUA_Achr2P18150_001	Banana	cytosol	64.21	62.62
GSMUA_Achr11P...	Banana	cytosol	63.71	62.44
GSMUA_Achr4P21720_001	Banana	cytosol	63.71	61.82
Os10t0574800-01	Rice	plasma membrane	63.45	61.43
EER91883	Sorghum	cytosol	63.2	61.18
TraesCS1A01G193000.1	Wheat	cytosol	61.68	60.0
TraesCS1D01G196700.1	Wheat	cytosol	61.17	59.51
Bra017330.1-P	Field mustard	cytosol	57.61	57.61
Zm00001d034885_P002	Maize	cytosol	60.66	57.45
Zm00001d012827_P002	Maize	cytosol	61.17	57.24
Os03t0854100-01	Rice	cytosol	59.64	57.04
EER90493	Sorghum	cytosol	60.15	56.97
Zm00001d047020_P002	Maize	cytosol	62.94	56.36
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	57.61	54.83
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	57.11	54.35
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	61.68	51.59
Zm00001d030031_P002	Maize	plastid	62.44	50.93
TraesCS5B01G554600.1	Wheat	cytosol, plastid	56.85	48.48
HORVU5Hr1G123590.1	Barley	cytosol	57.61	46.61
Bra012634.1-P	Field mustard	cytosol	91.12	35.09
HORVU1Hr1G047800.23	Barley	plastid	20.81	24.26
Bra017179.1-P	Field mustard	cytosol	22.84	20.41
Bra005187.1-P	Field mustard	cytosol	22.08	19.73
Bra039812.1-P	Field mustard	cytosol	22.34	19.51
Bra007020.1-P	Field mustard	cytosol	21.83	18.94
Bra000005.1-P	Field mustard	mitochondrion	22.59	18.66
Bra021263.1-P	Field mustard	cytosol	12.94	18.61
Bra029030.1-P	Field mustard	cytosol	19.54	16.11
Bra002995.1-P	Field mustard	cytosol	18.78	15.61
Bra022711.1-P	Field mustard	cytosol	18.53	15.47
Bra019896.1-P	Field mustard	cytosol	15.74	8.05
Bra006193.1-P	Field mustard	cytosol	16.24	7.87
Bra008838.1-P	Field mustard	cytosol	16.24	7.75
Bra010046.1-P	Field mustard	cytosol	15.23	7.59
Bra029295.1-P	Field mustard	cytosol	15.48	7.08
Bra027124.1-P	Field mustard	cytosol	12.94	6.7
Bra026910.1-P	Field mustard	plastid	3.05	6.63

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	EnsemblPlantsGene:Bra013265
EnsemblPlants:Bra013265.1	EnsemblPlants:Bra013265.1-P	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	UniProt:M4D9V5	PFAM:PF01412
PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	SMART:SM00105	SUPFAM:SSF57863
UniParc:UPI0002545CD9	SEG:seg	:	:	:	:

Description

AT4G17890 (E=4e-172) AGD8 | AGD8 (ARF-GAP DOMAIN 8); ARF GTPase activator/ DNA binding / zinc ion binding

Coordinates

chrA01:+:4611084..4613352

Molecular Weight (calculated)

42567.2 Da

IEP (calculated)

9.186

GRAVY (calculated)

-0.612

Length

394 amino acids

Sequence
(BLAST)

001: MASSENLTDK NIVFRKLKSK SENKVCFDCS AKNPTWASVT YGVFLCIDCS ATHRSLGVHI SFVRSTNLDS WSPEQLRTMM FGGNNRAQVF FKQHGWTDGG
101: KIEAKYTSRA ADLYRQILAK EVAKAISQED TTNALPESPV AAEASNGLSS YSVKEHEATS SPKASNTVVP STFKKPIGAK RTGKTGGLGA RKLTTKPTGN
201: LYEQKPEEVA TVIPPPASST NNSGSKSSSY ASRFEYNDDF QSGGQSVGGT HVAPPKSSSF FSDFGMDSSY PKKPSSNSSK SQVEESDEAR KKFTNAKSIS
301: SAQYFGDQNK NADLESKATL QKFSGSASIS SADFFGHGQD DYSNVDITAS DLINRLSFQA QQDISSVMNI AGETKKKLGT FASGIFSDLQ DRML

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.