Factsheet for Bra007020.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78196	Canola	cytosol	96.7	98.65
Bra039812.1-P	Field mustard	cytosol	85.68	86.25
AT3G53710.2	Thale cress	cytosol	83.7	82.79
Bra000005.1-P	Field mustard	mitochondrion	74.67	71.07
Bra005187.1-P	Field mustard	cytosol	67.62	69.61
Bra017179.1-P	Field mustard	cytosol	60.35	62.13
Bra026910.1-P	Field mustard	plastid	24.45	61.33
Bra013265.1-P	Field mustard	cytosol	18.94	21.83
Bra024999.1-P	Field mustard	cytosol	17.4	21.64
Bra017330.1-P	Field mustard	cytosol	17.84	20.56
Bra021263.1-P	Field mustard	cytosol	12.11	20.07
Bra002995.1-P	Field mustard	cytosol	18.28	17.51
Bra029030.1-P	Field mustard	cytosol	18.28	17.36
Bra022711.1-P	Field mustard	cytosol	17.4	16.74
Bra012634.1-P	Field mustard	cytosol	20.26	8.99
Bra006193.1-P	Field mustard	cytosol	15.2	8.49
Bra008838.1-P	Field mustard	cytosol	14.98	8.23
Bra010046.1-P	Field mustard	cytosol	13.0	7.46
Bra019896.1-P	Field mustard	cytosol	12.56	7.4
Bra029295.1-P	Field mustard	cytosol	13.88	7.31
Bra027124.1-P	Field mustard	cytosol	11.01	6.57

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	EnsemblPlantsGene:Bra007020
EnsemblPlants:Bra007020.1	EnsemblPlants:Bra007020.1-P	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150
GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508	UniProt:M4CS28
PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF35	SMART:SM00105
SUPFAM:SSF57863	UniParc:UPI0002542F97	SEG:seg	:	:	:

Description

AT3G53710 (E=7e-178) AGD6 | AGD6; ARF GTPase activator/ DNA binding / zinc ion binding

Coordinates

chrA09:-:26859054..26861246

Molecular Weight (calculated)

48952.1 Da

IEP (calculated)

9.070

GRAVY (calculated)

-0.874

Length

454 amino acids

Sequence
(BLAST)

001: MAAAARKLRT LQSQPDNKVC VDCAQKNPQW ASVSYGIFMC LECSGKHRGL GVHISFVRSV TMDSWSEIQI KKMEAGGNER LNSFLAQYGI AKETDIVSKY
101: NSNAAAVYRN RIQALAEGKP WSDPPVVKEA VGGMHKKKPP LGNGGNGGWD SWGNDDSYRS RTDMRRNQSE NDFRGLGGGG GGAPVKSRSS EDIYTRSQLE
201: ASAAGKESFF ARRMAENESK PEGLPPSQGG KYVGFGSGSG PVPRSNQQDD VYSVVSQGFG RLSMVAASAA SVVQTGTKEF TSKVKEGGYD HKVSETVNVV
301: ASKTTEIGQR TWGIMKGVMA IASQKVGEYT KEGTTTTSWN QRNESESNGY YQNFGNGNKA ANPSVEGKGS QSSSSGYYNN SHKSNSWDDW GENESKKKEA
401: VASKGSSASN DDDGWTGWDD PKDDVYYQSA GDKKSAGHNG KSDTAWTGGG FQYR

Best Arabidopsis Sequence Match ( AT3G53710.1 )
(BLAST)

001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL

Arabidopsis Description

AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.