Factsheet for Bra017330.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59045	Canola	cytosol	98.48	98.73
AT2G35210.1	Thale cress	cytosol	81.98	81.77
VIT_02s0012g01330.t01	Wine grape	cytosol	64.21	62.47
Solyc08g005070.2.1	Tomato	cytosol	61.68	60.45
Bra024999.1-P	Field mustard	cytosol	55.84	60.27
PGSC0003DMT400002955	Potato	cytosol	61.68	59.85
Solyc08g076920.2.1	Tomato	nucleus	62.44	59.71
KRH75607	Soybean	cytosol	60.91	59.55
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	60.66	59.31
PGSC0003DMT400045159	Potato	cytosol	61.17	58.5
GSMUA_Achr4P21720_001	Banana	cytosol	59.9	58.13
GSMUA_Achr11P...	Banana	cytosol	58.88	57.71
GSMUA_Achr4P28870_001	Banana	cytosol	59.14	57.67
Bra013265.1-P	Field mustard	cytosol	57.61	57.61
GSMUA_Achr2P18150_001	Banana	cytosol	58.63	57.18
Os03t0854100-01	Rice	cytosol	57.87	55.34
Os10t0574800-01	Rice	plasma membrane	57.11	55.28
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	57.61	54.83
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	57.61	54.83
EER91883	Sorghum	cytosol	56.6	54.79
TraesCS1A01G193000.1	Wheat	cytosol	56.09	54.57
TraesCS1D01G196700.1	Wheat	cytosol	55.84	54.32
EER90493	Sorghum	cytosol	57.11	54.09
Zm00001d012827_P002	Maize	cytosol	56.6	52.97
Zm00001d034885_P002	Maize	cytosol	55.84	52.88
Zm00001d047020_P002	Maize	cytosol	56.85	50.91
TraesCS5B01G554600.1	Wheat	cytosol, plastid	57.87	49.35
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	55.84	46.71
HORVU5Hr1G123590.1	Barley	cytosol	57.36	46.41
Zm00001d030031_P002	Maize	plastid	56.6	46.17
HORVU1Hr1G047800.23	Barley	plastid	20.05	23.37
Bra012634.1-P	Field mustard	cytosol	60.41	23.26
Bra021263.1-P	Field mustard	cytosol	14.47	20.8
Bra017179.1-P	Field mustard	cytosol	20.3	18.14
Bra007020.1-P	Field mustard	cytosol	20.56	17.84
Bra005187.1-P	Field mustard	cytosol	19.54	17.46
Bra039812.1-P	Field mustard	cytosol	19.8	17.29
Bra000005.1-P	Field mustard	mitochondrion	20.05	16.56
Bra029030.1-P	Field mustard	cytosol	17.77	14.64
Bra022711.1-P	Field mustard	cytosol	17.51	14.62
Bra002995.1-P	Field mustard	cytosol	17.26	14.35
Bra006193.1-P	Field mustard	cytosol	14.47	7.01
Bra010046.1-P	Field mustard	cytosol	13.45	6.7
Bra008838.1-P	Field mustard	cytosol	13.96	6.66
Bra019896.1-P	Field mustard	cytosol	12.69	6.49
Bra029295.1-P	Field mustard	cytosol	13.96	6.38
Bra026910.1-P	Field mustard	plastid	2.79	6.08
Bra027124.1-P	Field mustard	cytosol	10.91	5.65

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	EnsemblPlantsGene:Bra017330
EnsemblPlants:Bra017330.1	EnsemblPlants:Bra017330.1-P	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009555	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR038508
UniProt:M4DLE9	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF381
SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0002543C70	SEG:seg	:	:

Description

AT2G35210 (E=9e-134) RPA, AGD10, MEE28 | RPA (ROOT AND POLLEN ARFGAP); ARF GTPase activator/ DNA binding / zinc ion binding

Coordinates

chrA04:+:15339819..15341679

Molecular Weight (calculated)

43042.4 Da

IEP (calculated)

9.583

GRAVY (calculated)

-0.604

Length

394 amino acids

Sequence
(BLAST)

001: MASENLNDKV AVFKKLKSKS DNKICFDCNA KSPTWASVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SPEQLKMMVY GGNSRAHVFF KRHGWSGEGK
101: ADTKYTSRAA ESYKQTLARE VAKSNAEELL DLPPPDSTTK QVPNGLSTIK TTEEAPKESI NNNTKVPVSP RVSKSVKKPL GAKKTGKTGG LGARKLTTKS
201: SETLYDQKPE ESVVVQAAYS SANSSPSAKS ARSSFSSRFD YADGVQTREQ YMSNGPQVFG HVAPPKSTGF FEEFEMNGFQ KKPITTFIPQ IQETDEARKK
301: FSNAKSISSA QYFGNENNAM DLEAKSSLKK FSGSTAISSA ELFGDDDGDF PLDLSAGDLI NRLSLQAQQD MSSLKNMAEE TKKKLSSVAS SLWV

Best Arabidopsis Sequence Match ( AT2G35210.1 )
(BLAST)

001: MASENLNDKI SVFKKLKAKS DNKICFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SSEQLKMMIY GGNNRAQVFF KQYGWSDGGK
101: TEAKYTSRAA DLYKQILAKE VAKSKAEEEL DLPPSPPDST QVPNGLSSIK TSEALKESNT LKQQEKPDVV PVSPRISRSV KKPLGAKKTG KTGGLGARKL
201: TTKSSGTLYD QKPEESVIIQ ATSPVSAKSA RSSFSSRFDY ADNVQNREDY MSPQVVSHVA PPKSSGFFEE ELEMNGGRFQ KKPITSSSKL QIQETDEARK
301: KFTNAKSISS AQYFGNDNNS ADLEAKSSLK KFSGSSAISS ADLFGDGDGD FPLDLTAGDL LNRLSLQAQQ DISSLKNMAE ETKKKLGSVA SSLWV

Arabidopsis Description

AGD10RPA [Source:UniProtKB/TrEMBL;Acc:A0A178VQN0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.