Factsheet for Bra006193.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78515	Canola	cytosol	98.28	96.15
Bra008838.1-P	Field mustard	cytosol	93.85	92.37
VIT_01s0150g00030.t01	Wine grape	cytosol	79.46	77.64
KRH45201	Soybean	cytosol	78.11	77.16
PGSC0003DMT400005756	Potato	cytosol	76.63	76.25
KRH01512	Soybean	cytosol	77.98	75.57
Zm00001d049872_P001	Maize	cytosol	47.11	69.76
GSMUA_Achr11P...	Banana	cytosol	69.62	69.36
TraesCS5A01G293000.1	Wheat	cytosol	69.62	68.11
TraesCS5B01G292200.1	Wheat	cytosol	69.5	67.75
HORVU5Hr1G077570.15	Barley	cytosol	69.37	67.38
TraesCS5D01G300300.2	Wheat	cytosol	69.5	67.26
Os09t0510700-01	Rice	cytosol	69.0	67.11
EER99172	Sorghum	cytosol	68.76	66.87
GSMUA_Achr4P00060_001	Banana	cytosol	68.63	66.67
Zm00001d021087_P003	Maize	cytosol	68.27	66.31
TraesCS7A01G263800.2	Wheat	cytosol	65.19	64.4
OQU80812	Sorghum	cytosol	64.94	64.08
HORVU7Hr1G055220.21	Barley	cytosol	65.07	63.66
Zm00001d031667_P006	Maize	cytosol	63.84	63.06
Os08t0537600-01	Rice	plasma membrane	64.33	62.94
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	65.31	62.69
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	65.31	62.69
Bra010046.1-P	Field mustard	cytosol	60.76	62.45
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	56.33	61.89
Bra029295.1-P	Field mustard	cytosol	63.96	60.32
Zm00001d009353_P001	Maize	cytosol	8.86	59.5
Zm00001d015981_P001	Maize	peroxisome	9.96	52.94
Zm00001d015278_P001	Maize	mitochondrion	19.8	47.92
Zm00001d004245_P003	Maize	cytosol	10.95	46.35
Zm00001d049871_P001	Maize	cytosol	10.46	44.5
Bra019896.1-P	Field mustard	cytosol	41.94	44.29
Bra027124.1-P	Field mustard	cytosol	39.36	42.05
Zm00001d023982_P001	Maize	cytosol	15.5	32.39
Bra021263.1-P	Field mustard	cytosol	7.87	23.36
Bra002995.1-P	Field mustard	cytosol	10.58	18.14
Bra029030.1-P	Field mustard	cytosol	10.33	17.57
Bra024999.1-P	Field mustard	cytosol	7.63	16.99
Bra022711.1-P	Field mustard	cytosol	9.72	16.74
Bra013265.1-P	Field mustard	cytosol	7.87	16.24
Bra039812.1-P	Field mustard	cytosol	8.61	15.52
Bra007020.1-P	Field mustard	cytosol	8.49	15.2
Bra005187.1-P	Field mustard	cytosol	8.24	15.19
Bra017179.1-P	Field mustard	cytosol	8.12	14.97
Bra017330.1-P	Field mustard	cytosol	7.01	14.47
Bra000005.1-P	Field mustard	mitochondrion	8.24	14.05
Bra026910.1-P	Field mustard	plastid	1.6	7.18
Bra012634.1-P	Field mustard	cytosol	7.5	5.96

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:BAR_dom	EnsemblPlantsGene:Bra006193	EnsemblPlants:Bra006193.1	EnsemblPlants:Bra006193.1-P	ncoils:Coil	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005886	GO:GO:0006810	GO:GO:0006897
GO:GO:0007275	GO:GO:0008150	GO:GO:0008289	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733
GO:GO:0009965	GO:GO:0010051	GO:GO:0010087	GO:GO:0016020	GO:GO:0030140	GO:GO:0030234
GO:GO:0035091	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110
InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508	UniProt:M4CPQ4
PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405
PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PFscan:PS51021	PANTHER:PTHR23180
PANTHER:PTHR23180:SF374	SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657
SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI000253FA55	SEG:seg	:

Description

AT5G13300 (E=0.0) SFC, VAN3, AGD3 | SFC (SCARFACE); ARF GTPase activator/ phosphoinositide binding

Coordinates

chrA03:-:2454231..2458686

Molecular Weight (calculated)

90620.2 Da

IEP (calculated)

8.133

GRAVY (calculated)

-0.485

Length

813 amino acids

Sequence
(BLAST)

001: MEESAEILRE RSLKFYKGCR KYTEGLGEAY DGDIAFASAL ETFGGGHNDP ISVAFGGPVM TKFTIALREI GTYKEVLRSQ VEHILNDRLL QFANMDLHEV
101: KEARKRFDKA SLTYDQAREK FLSLRKGTRS DVAAALEQEL HTSRSMFEQA RFNLVTTLSN VEAKKRFEFL EAVSGTMDAH LRYFKQGYEL LHQMEPYINQ
201: VLTYAKQSRE RSNYEQAALN EKMQEYKRQV DRESRFGSNG SNGSPNGDGI QAIGRSSHKM IDAVMQSAAR GKVQTIRQGY LSKRSSNLRG DWKRRFFVLD
301: SRGMLYYYRK QCSKPSGASS QLSGQRNSSE LGSGLLSRWL SSNNHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR IISPSKNYTL QAESALDQMD
401: WIEKITGVIA SLLSSQVPER CLPGSPMGSG HHRSASESSS YESSEYDIPN TEEFVCERSF LGYNERPSRN FQPQRSIRKG EKPIDVLKKV SGNDKCADCG
501: APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWAPSVITL FQALGNTFAN TVWEELLHSR SAFHVEPGLT GSDKSRVMVT GKPSYADMIS
601: IKEKYIQAKY AEKLFVRRSR DCDFPQSVAQ QMWDAVSGND KKAVYRLIVN SEADVNSVYE DQSSSTSSLT LSRVMLLPEK PPTREDVLLR LRNELLDRNS
701: SGCSSSIIPL EETGGCSLLH CACEKADIGM VELLLQYGAN VNAKDSSGQT PLHCCIRRGK AVVARLLLTR GADPEAVNGE GKTALDIAAE SKFTDAEVLA
801: LLSEAANGYN HRQ

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.