Factsheet for GSMUA_Achr7P22530_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plasma membrane 4
mitochondrion 1
endoplasmic reticulum 5
extracellular 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P04880_001
GSMUA_Achr4P00060_001
GSMUA_Achr4P18460_001
GSMUA_Achr4P21160_001
GSMUA_Achr4P21170_001
GSMUA_Achr5P02990_001
GSMUA_Achr7P07730_001
GSMUA_Achr7P22530_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	GSMUA_Achr4P21160_001	AT3G63300.1	19363154
AT5G13300.1	GSMUA_Achr4P21170_001	AT3G63300.1	19363154
AT5G13300.1	GSMUA_Achr5P02990_001	AT3G63300.1	19363154
AT5G13300.1	GSMUA_Achr7P07730_001	AT3G63300.1	19363154
AT5G13300.1	GSMUA_AchrUn_...	AT3G63300.1	19363154
AT5G13300.1	GSMUA_Achr11P...	AT5G13300.1	15743878
AT5G13300.1	GSMUA_Achr4P00060_001	AT5G13300.1	15743878
AT5G13300.1	GSMUA_Achr7P22530_001	AT5G13300.1	15743878
AT5G13300.1	GSMUA_Achr10P...	AT5G26980.1	15743878
AT5G13300.1	GSMUA_Achr11P...	AT5G26980.1	15743878
AT5G13300.1	GSMUA_Achr4P18460_001	AT5G26980.1	15743878
AT5G13300.1	GSMUA_Achr1P04880_001	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00550_001	Banana	cytosol	57.84	76.02
GSMUA_Achr11P...	Banana	cytosol	79.46	72.06
GSMUA_Achr4P00060_001	Banana	cytosol	81.35	71.92
Zm00001d009353_P001	Maize	cytosol	10.95	66.94
Zm00001d015981_P001	Maize	peroxisome	13.24	64.05
Os09t0510700-01	Rice	cytosol	69.46	61.48
TraesCS5B01G292200.1	Wheat	cytosol	68.11	60.43
TraesCS5A01G293000.1	Wheat	cytosol	67.7	60.29
TraesCS5D01G300300.2	Wheat	cytosol	68.24	60.12
HORVU5Hr1G077570.15	Barley	cytosol	67.57	59.74
Zm00001d021087_P003	Maize	cytosol	67.43	59.62
PGSC0003DMT400036762	Potato	cytosol	47.03	59.59
EER99172	Sorghum	cytosol	67.3	59.57
KRH45201	Soybean	cytosol	65.95	59.3
CDX70496	Canola	cytosol	44.05	58.95
VIT_01s0150g00030.t01	Wine grape	cytosol	65.41	58.17
KRH01512	Soybean	cytosol	65.54	57.81
Solyc12g042170.1.1	Tomato	cytosol	41.89	57.2
Zm00001d049872_P001	Maize	cytosol	42.43	57.19
PGSC0003DMT400005756	Potato	cytosol	62.84	56.92
Zm00001d004245_P003	Maize	cytosol	14.73	56.77
TraesCS7A01G263800.2	Wheat	cytosol	62.84	56.5
Bra006193.1-P	Field mustard	cytosol	61.89	56.33
Solyc05g023750.2.1	Tomato	cytosol	62.16	56.3
Os08t0537600-01	Rice	plasma membrane	63.11	56.2
AT5G13300.1	Thale cress	cytosol	62.7	56.11
HORVU7Hr1G055220.21	Barley	cytosol	62.7	55.84
OQU80812	Sorghum	cytosol	62.16	55.83
CDY09784	Canola	cytosol	60.14	55.76
Zm00001d031667_P006	Maize	cytosol	61.49	55.29
CDX69650	Canola	cytosol	61.35	54.96
CDX86943	Canola	cytosol	52.84	54.92
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	62.84	54.9
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	62.84	54.9
CDX78515	Canola	cytosol	61.62	54.87
Bra008838.1-P	Field mustard	cytosol	61.08	54.72
VIT_17s0000g00310.t01	Wine grape	cytosol	58.92	52.72
Solyc03g118260.1.1	Tomato	cytosol	54.59	50.5
CDY00242	Canola	cytosol	52.57	49.43
AT5G61980.1	Thale cress	cytosol	55.27	49.4
Bra010046.1-P	Field mustard	cytosol	52.7	49.3
KRH59741	Soybean	cytosol	52.57	48.62
Bra029295.1-P	Field mustard	cytosol	56.08	48.14
CDY30689	Canola	cytosol	55.95	48.03
Zm00001d049871_P001	Maize	cytosol	12.3	47.64
KRH63858	Soybean	cytosol	49.32	46.5
CDY53619	Canola	cytosol	19.59	43.03
KRH54108	Soybean	cytosol	41.62	41.73
Zm00001d015278_P001	Maize	mitochondrion	18.38	40.48
GSMUA_Achr1P01960_001	Banana	cytosol	41.62	39.34
GSMUA_Achr8P00540_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	12.57	36.19
Zm00001d023982_P001	Maize	cytosol	18.24	34.7
Solyc12g042180.1.1	Tomato	cytosol	9.19	30.36
GSMUA_Achr7P22550_001	Banana	cytosol	3.24	18.9
GSMUA_Achr4P23780_001	Banana	cytosol	11.08	17.23
GSMUA_Achr8P07470_001	Banana	cytosol	10.81	16.99
GSMUA_Achr1P08800_001	Banana	cytosol	10.54	16.32
GSMUA_Achr5P26280_001	Banana	cytosol	10.41	16.31
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	9.86	15.34
GSMUA_Achr2P18150_001	Banana	cytosol	7.84	14.36
GSMUA_Achr11P...	Banana	cytosol	7.7	14.18
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	7.57	14.14
GSMUA_Achr10P...	Banana	mitochondrion	7.57	14.11
GSMUA_Achr7P15230_001	Banana	cytosol	8.24	13.96
GSMUA_AchrUn_...	Banana	mitochondrion	7.97	13.92
GSMUA_Achr4P21720_001	Banana	cytosol	7.57	13.79
GSMUA_Achr4P28870_001	Banana	cytosol	7.43	13.61
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	8.24	13.41
GSMUA_Achr9P04020_001	Banana	mitochondrion	8.51	13.1
CDY08879	Canola	cytosol	2.43	5.71

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr7G22530_001	EnsemblPlants:GSMUA_Achr7P22530_001	EnsemblPlants:GSMUA_Achr7T22530_001	InterPro:IPR001164	InterPro:IPR001849
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508	UniProt:M0TJT9
PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405
PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374
SMART:SM00105	SMART:SM00233	SMART:SM00248	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729
SUPFAM:SSF57863	TMHMM:TMhelix	UniParc:UPI00029542B5	SEG:seg	:	:

Description

ADP-ribosylation factor GTPase-activating protein AGD3 [Source:GMGC_GENE;Acc:GSMUA_Achr7G22530_001]

Coordinates

chr7:-:25006242..25013830

Molecular Weight (calculated)

83502.9 Da

IEP (calculated)

7.469

GRAVY (calculated)

-0.408

Length

740 amino acids

Sequence
(BLAST)

001: MYIYRQAWLV KLIDLLIVNY SWYPILILEI DSHFFWPQAR EKYLALKKGT KADIATTLED ELHIARSSFE QARFDLVTAL SNIEAKKRYE LLEAVTGIME
101: AHLRYFKQGY ELLHQMEPYI HQVLAYAQQS RDRSKYEQAA LIERMQEFKR QIDRESRLSA NGSHDSPNGD GIQAIGRSSH KMIEAVMQSA AKGKVQTIRH
201: GYLSKRSSNL RGDWKRRFFV LDSRGMLYYY RKQWIRSSVR HHSNPRGHNS SEHGSGLLSR WFSSHYHGGV HDEKSVARHT VNLLTSTIKV DADQSDLRFC
301: FRIISPTKNY TLQAENAMDQ MDWIEKITGV IASLLNSQSP EQHLLTSPMG GGHHRAASES SSLGSSSDLD QLANEDSSLE KSSVSGHFDR CIRSSQHYRF
401: NSKHEKPIDV LRKVCGNDEC ADCGAPEPDW ASLNLGILLC IECSGVHRNL GVHISKVRSL TLDVRVWDPS VISLFRSLGN TFANSIWEES FLITSNGKSG
501: DVSSLCTLDR NQEHCYISKP KHSDPIAVKE KFIQAKYAEK HFVHKTADQL SKAQQMWDSV CANDTKAVYH HIVALDADVN ITYRQASINS SLTLENTILL
601: ADQTSVAHDH RSSCLLGKSL QMSSTMSCIS SSGTSDIRNE VDECLEGFTL LHLACLTSDI GMVELLLQYG ANVNSTDFKG RTPLHHCILR GRQLFAKLLL
701: TRGANPRAID EDGRTALQYA LEGGNVDDEE IIILLANPNR

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.