Factsheet for GSMUA_Achr8P00540_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 2
plastid 1
endoplasmic reticulum 3
extracellular 3
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P22550_001	Banana	cytosol	31.52	63.78
Zm00001d016932_P001	Maize	endoplasmic reticulum	43.19	60.66
Zm00001d031462_P001	Maize	endoplasmic reticulum, extracellular	42.02	56.54
CDX86944	Canola	cytosol	25.29	49.62
GSMUA_Achr11P...	Banana	cytosol	77.04	24.26
GSMUA_Achr4P00060_001	Banana	cytosol	76.65	23.54
GSMUA_Achr1P01960_001	Banana	cytosol	54.86	18.01
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	36.19	12.57
GSMUA_Achr4P23780_001	Banana	cytosol	3.5	1.89
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	3.11	1.76
GSMUA_Achr8P00550_001	Banana	cytosol	3.5	1.6
GSMUA_Achr8P07470_001	Banana	cytosol	2.72	1.49
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	2.72	1.47
GSMUA_Achr1P08800_001	Banana	cytosol	2.72	1.46
GSMUA_Achr5P26280_001	Banana	cytosol	2.33	1.27
GSMUA_Achr4P21720_001	Banana	cytosol	1.95	1.23
GSMUA_AchrUn_...	Banana	mitochondrion	1.95	1.18
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	1.56	1.01
GSMUA_Achr10P...	Banana	mitochondrion	1.56	1.01
GSMUA_Achr11P...	Banana	cytosol	1.56	1.0
GSMUA_Achr2P18150_001	Banana	cytosol	1.56	0.99
GSMUA_Achr4P28870_001	Banana	cytosol	1.17	0.74
GSMUA_Achr7P15230_001	Banana	cytosol	1.17	0.69
GSMUA_Achr9P04020_001	Banana	mitochondrion	1.17	0.62

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.3.4.1	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf	InterPro:BAR_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
EnsemblPlantsGene:GSMUA_Achr8G00540_001	EnsemblPlants:GSMUA_Achr8P00540_001	EnsemblPlants:GSMUA_Achr8T00540_001	InterPro:IPR004148	InterPro:IPR027267	UniProt:M0TLF6
PFAM:PF16746	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374	SMART:SM00721	SUPFAM:SSF103657	UniParc:UPI000296501B
SEG:seg	:	:	:	:	:

Description

ADP-ribosylation factor GTPase-activating protein AGD3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G00540_001]

Coordinates

chr8:+:471043..478744

Molecular Weight (calculated)

29412.4 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.096

Length

257 amino acids

Sequence
(BLAST)

001: MKPVLHCAGT SLSQLFSENW ILALVILIYV IIQSLEESAE SLRDRCLKFY KGCHKYTEGL GEAYDGDIAF ASSLETFGGG HNDPISVAFG GPVMTKFTIA
101: LREIGTYKEV LRSQVEHILN DRLLQFVEID LHEVKDTRKH FDKASLLYDQ AREKYLSLKK GTKADIVTVL EDELYSARSS FEQTRFNLVT ALSNIEAKKR
201: FEFLEAVSGT MDAHLRYFKQ GYELLHQMEP YIHQVHPYPL LNALFMYFSS CVAYKLL

Best Arabidopsis Sequence Match ( AT1G10870.1 )
(BLAST)

001: MATFINLEDS PMFQKQVCSL EGTADELKDR CQKLYKGVKK FMGTLGEASK GESAFAACLE EFGGGPDDPI SLSIGGPVIS KFINALRELA SYKEFLCSQV
101: EHVLLERLMN FISVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITKAI GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN ACAECNAPEP DWASLNLGVL
501: LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL GNVYCNSLWE GLLHLDDDCE DGSALSHASV SKPCPEDSFS VKEKYILGKY LEKALVIKDE
601: SEANLSAASR IWEAVQSRNI REIYRLIVTT GDVNIINTKF DDITDIDAYH HIDAAEKAVK KRHDPTVCQR IKESNEPRSC LQGCSLLHVA CHIGDSVLLE
701: LLLQFGADLN IRDYHGRTPL HHCISSGNHK FAKILLRRGA RPSIEDDGGL SVLERAMEMG AITDEELFLL LAECA

Arabidopsis Description

AGD4ARF-GAP domain 4 [Source:TAIR;Acc:AT1G10870]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.